Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1732
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    30   0.31 
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.9  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    26   5.1  
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    26   5.1  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    25   9.0  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 302  IHDKKNCVKDTGSTHPRPEKVPRTRIHHSV 391
            IH   NC+ D G T  +PEKVP    H+ V
Sbjct: 2246 IHVDFNCLFDKGLTFEKPEKVPFRLTHNMV 2275


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 556 RHNHHRTDRHQHKNTNYQLNRGIKADNVQE 467
           RH +H TD H     ++ L+  + A+N  E
Sbjct: 339 RHTNHSTDHHDDTVDSHLLHSFVSAENANE 368


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 369 EPESIIQCPRDWISQSGIAQRTLMERIREFVFCS 470
           E ES+   P +WI    I  R+++ R+    +CS
Sbjct: 474 ESESMEPRPNEWIPGLEILHRSVLSRLNPLRYCS 507


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 749 SYSIRILNDTKDTETKII 696
           SYS+RI ND  DT+ K+I
Sbjct: 161 SYSLRIGNDIYDTQNKLI 178


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 212 STPVQNVVYRPQAAVRVW 265
           S  + N+VYRP  AV  W
Sbjct: 274 SGQISNIVYRPSGAVNPW 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,082
Number of Sequences: 5004
Number of extensions: 62643
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)