Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1732
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784     31   1.0  
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093           31   1.3  
08_01_0652 + 5627226-5628395,5628885-5629040,5629115-5629304,562...    28   7.1  

>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
          Length = 1035

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 294  LTAFMIKKIVLR--ILVAHIPDQRKYLEPESIIQCPRDW 404
            ++A M++ I++R    + H+PD +   EP  I+ C +DW
Sbjct: 938  MSAPMLETILIRGCCSLRHLPDVKGLHEPRPIVYCEKDW 976


>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
          Length = 1040

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 294  LTAFMIKKIVLR--ILVAHIPDQRKYLEPESIIQCPRDW 404
            ++A M++ I++R    + H+PD +   EP  I+ C +DW
Sbjct: 943  MSAPMLEAIMIRGCCSLRHLPDVQGLHEPRPIVYCEKDW 981


>08_01_0652 +
           5627226-5628395,5628885-5629040,5629115-5629304,
           5629590-5629729
          Length = 551

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 290 KTNGIHDKKNCVKDTGSTHPRPEKVPRTRIHHSVPKRLDISVWNSPTHSHGTNKRIC 460
           + NGI  +K  V+ TGS++ R EK  R    H      ++  W S +   G N   C
Sbjct: 488 RANGIPIEKIYVRRTGSSYLRGEKFMRDLGKH------ELEFWGSDSEFCGPNSEFC 538


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,408,522
Number of Sequences: 37544
Number of extensions: 366492
Number of successful extensions: 802
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)