Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1732
         (764 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118503-1|AAM49872.1|  935|Drosophila melanogaster LD09921p pro...    29   9.2  
AE014297-2087|AAF55228.2| 1249|Drosophila melanogaster CG4606-PA...    29   9.2  
AB120954-1|BAC92711.1| 1249|Drosophila melanogaster alpha-mannos...    29   9.2  
AB018079-1|BAA75817.1| 1249|Drosophila melanogaster alpha-mannos...    29   9.2  

>AY118503-1|AAM49872.1|  935|Drosophila melanogaster LD09921p
           protein.
          Length = 935

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 130 FKIYYKGTTKLISLSSVFLDLVLCILVLHPGAKRCIP 240
           FK++ +G+ + I L S F+ ++LC+  +  G     P
Sbjct: 3   FKLFRRGSARCIGLLSAFVTILLCLYYISIGQPNPTP 39


>AE014297-2087|AAF55228.2| 1249|Drosophila melanogaster CG4606-PA
           protein.
          Length = 1249

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 130 FKIYYKGTTKLISLSSVFLDLVLCILVLHPGAKRCIP 240
           FK++ +G+ + I L S F+ ++LC+  +  G     P
Sbjct: 3   FKLFRRGSARCIGLLSAFVTILLCLYYISIGQPNPTP 39


>AB120954-1|BAC92711.1| 1249|Drosophila melanogaster
           alpha-mannosidase protein.
          Length = 1249

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 130 FKIYYKGTTKLISLSSVFLDLVLCILVLHPGAKRCIP 240
           FK++ +G+ + I L S F+ ++LC+  +  G     P
Sbjct: 3   FKLFRRGSARCIGLLSAFVTILLCLYYISIGQPNPTP 39


>AB018079-1|BAA75817.1| 1249|Drosophila melanogaster
           alpha-mannosidase protein.
          Length = 1249

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 130 FKIYYKGTTKLISLSSVFLDLVLCILVLHPGAKRCIP 240
           FK++ +G+ + I L S F+ ++LC+  +  G     P
Sbjct: 3   FKLFRRGSARCIGLLSAFVTILLCLYYISIGQPNPTP 39


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,506,845
Number of Sequences: 53049
Number of extensions: 659217
Number of successful extensions: 2110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2095
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3520086471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)