Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1732
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64848-13|AAY86245.1|  339|Caenorhabditis elegans Hypothetical p...    30   2.1  
U97014-3|AAB52427.3|  856|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>U64848-13|AAY86245.1|  339|Caenorhabditis elegans Hypothetical
           protein C50E3.15 protein.
          Length = 339

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = -3

Query: 627 LWVVSQLQNLIICLKKIVCNELSDVTIITGPTDTNIRILITN*IVASRLTTFRNKIQ 457
           +W++    +L+  ++   C+ +SD T +      NIR+ ++     S +T F   +Q
Sbjct: 1   MWMLRSFLSLLCIVQVFKCSSISDYTDMEKWLSENIRVYLSGISETSEMTLFHGSMQ 57


>U97014-3|AAB52427.3|  856|Caenorhabditis elegans Hypothetical
           protein T05E8.3 protein.
          Length = 856

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 278 SFFRKTNGIHDKKNCVKDTGSTHPRPEKVPRTRI 379
           S FR TNGI  K+  ++ T  +   P+K+P+T I
Sbjct: 89  STFRITNGILKKEKKIEVTTISTQTPKKLPKTPI 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,295,611
Number of Sequences: 27780
Number of extensions: 341842
Number of successful extensions: 820
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)