Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1732
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   5.4  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   7.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.2  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 464 KYKFSYSFHESALGYSRLRYPVSWALNDGF 375
           ++K+SY    +  G + L++ V+W    GF
Sbjct: 266 EFKYSYEISNAFRGNNNLKWLVNWGEQWGF 295


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 141 INLKDYPPKGSKYND*KYCVCAFAT 67
           +NL +YPP+   Y+     +CA  T
Sbjct: 182 VNLVEYPPESGNYSA-DSAMCAMLT 205


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +1

Query: 433 LSWNE*ENLYFVPERCQP*CHDLVGN*YSYVGVCRSGDDCDVRELITHNFLQAYYKIL 606
           L W     +Y V   C+   H  V +   ++G C S  +  +  L + +F  A+  I+
Sbjct: 20  LCWLPFFTMYLVRAFCRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRFAFKSII 77


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +1

Query: 433 LSWNE*ENLYFVPERCQP*CHDLVGN*YSYVGVCRSGDDCDVRELITHNFLQAYYKIL 606
           L W     +Y V   C+   H  V +   ++G C S  +  +  L + +F  A+  I+
Sbjct: 468 LCWLPFFTMYLVRAFCRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRFAFKSII 525


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,305
Number of Sequences: 438
Number of extensions: 4431
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)