Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1730
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   2.5  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.9  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    25   9.9  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   9.9  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 172 IRIFTFFFLEPFAIFISVFRFFLFISFDFACKFCLCQYKNFFRFP 306
           +  F FFF   F++F   F  FLF S  F   F LC++K+    P
Sbjct: 105 VPFFCFFFY--FSLFS--FFSFLFTSLHFNFFFRLCRHKHLLDIP 145


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 181 FTFFFLEPFAIFISVFRFFLFISFDFACKFCLCQYKNF 294
           F FF  + F ++ S F    F+ F F    C+C + +F
Sbjct: 135 FLFFLSQIFIVYFSSFPILHFLFFFF---LCVCVFLSF 169


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 624 VKYSPRT*HDPYARKGHLY*HRHCTYQILKHIFFCIGIY 740
           VK   +T H  Y  +G+ Y  RH  Y+ +KHI+   G++
Sbjct: 41  VKILYQTNHASY--RGYAY-SRHGLYKAIKHIYHVYGLH 76


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = -2

Query: 211 WRTVLXXXXXKF*STKSQQLTFHDSKYQNNRYLNILREKEACFQE--TIRRDSRSELG*N 38
           W++ L          ++ QL     + + +  L + REK+A F+E  T++   + EL   
Sbjct: 127 WQSDLSSQFASLEEERAVQLKHDRERAEVDLQLRLKREKDALFEEEQTLQNKIQDELQRR 186

Query: 37  SCGSSNEKKKKK 2
           S  +     KKK
Sbjct: 187 SYETPQSSSKKK 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,465
Number of Sequences: 5004
Number of extensions: 64833
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)