Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1730
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0501 - 9955987-9956244,9956329-9956583,9956713-9956884,995...    29   6.0  
07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936           29   6.0  

>09_02_0501 - 9955987-9956244,9956329-9956583,9956713-9956884,
            9957000-9957227,9959102-9959235,9959319-9959402,
            9959539-9959829,9960076-9960405,9960526-9960668,
            9960970-9961126,9961210-9961313,9961423-9961583,
            9961664-9961980,9962094-9962375,9962471-9962772,
            9962848-9962938,9963262-9963338,9963428-9963587,
            9963682-9963766,9963838-9963949,9964864-9964943,
            9968644-9968981
          Length = 1386

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -3

Query: 456  TQSLKNKNVFTKKNKPLFEKIKTPRKSINRVNFP 355
            TQ  KN  ++ ++NK L +++ TP +S + ++FP
Sbjct: 1073 TQVYKNSELY-RRNKNLIKELSTPHESSSDLSFP 1105


>07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936
          Length = 838

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -1

Query: 770 RVTRFRFLRS---IYTYTKKYMF*NLICTMTVLIKVTFTSIWVVLCARAVFY 624
           R T F F  S   ++T+     F +++C+M   I   F +IW+V+ A  VF+
Sbjct: 414 RTTGFSFAVSSNMLFTFLIAQAFLSMMCSMKAFI-FFFFAIWIVIMAAFVFW 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,825,596
Number of Sequences: 37544
Number of extensions: 323440
Number of successful extensions: 559
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)