Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1730
         (827 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70213-2|CAA94171.1|  304|Caenorhabditis elegans Hypothetical pr...    36   0.047
U28740-4|AAA68319.2|  276|Caenorhabditis elegans Temporarily ass...    32   0.58 
Z92829-8|CAB07348.1|  305|Caenorhabditis elegans Hypothetical pr...    31   0.76 
U00052-5|AAK21423.1|  289|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z80223-4|CAB02318.1|  229|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF100663-3|AAC68980.1|  529|Caenorhabditis elegans Udp-glucurono...    29   5.4  
Z92804-1|CAB07252.1|  338|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U39678-6|AAK39206.1|  208|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U28943-11|AAK68295.1|  319|Caenorhabditis elegans Hypothetical p...    28   7.1  
AL110482-9|CAB60340.3|  372|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z99278-6|CAD59170.1|  276|Caenorhabditis elegans Hypothetical pr...    28   9.4  
Z47068-4|CAA87332.1|  153|Caenorhabditis elegans Hypothetical pr...    28   9.4  
U88182-2|AAB42308.4|  961|Caenorhabditis elegans Patched related...    28   9.4  

>Z70213-2|CAA94171.1|  304|Caenorhabditis elegans Hypothetical
           protein ZK930.2 protein.
          Length = 304

 Score = 35.5 bits (78), Expect = 0.047
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 175 RIFTFFFLEPFAIFISVFRF-FLFISFDFACKFCLCQY 285
           R  +F FL+  ++FIS+  F F F+SF   C+F +C +
Sbjct: 8   RSSSFLFLQKTSLFISISSFIFFFLSFHETCRFVICAF 45


>U28740-4|AAA68319.2|  276|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 132 protein.
          Length = 276

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 136 SNRGTLIVVILWIRIFTFFFLEPFAIF-ISVFRFFLF 243
           ++ G+L+ V+LW  IF  FF+ P   F I+VF   LF
Sbjct: 193 ASMGSLLCVLLWAGIFQMFFMSPAVNFVINVFGAGLF 229


>Z92829-8|CAB07348.1|  305|Caenorhabditis elegans Hypothetical
           protein F10A3.12 protein.
          Length = 305

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = +2

Query: 584 LALLSLPFIYSYTCKIQPSHITRPICS*RSPLLTPSLYISNFKTYIFLYRYIS 742
           + +L++ F+Y Y   ++PS I   I + +   L   L ISNF T+ F + Y++
Sbjct: 92  MTMLAIHFLYRYVSVVRPSDI--EIFAPKRFHLWALLLISNFATWFFCFYYLN 142


>U00052-5|AAK21423.1|  289|Caenorhabditis elegans Hypothetical
           protein K02F3.8 protein.
          Length = 289

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 690 HCTYQILKHIFFCIGIYRPEKAETCNSH 773
           +CT  +  + F+C+G   PE  + CNS+
Sbjct: 253 YCTNYVENYNFYCVGDMSPEHEKFCNSY 280


>Z80223-4|CAB02318.1|  229|Caenorhabditis elegans Hypothetical
           protein F26D10.11 protein.
          Length = 229

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 166 LWIRIFTFFFLEPFAI-FISVFRFFLFISFDFACKFCLCQYKNFFRFPF 309
           +W  I  F  L    + F+++F   L +       F LC + +FF F F
Sbjct: 75  MWFEISAFLVLAATVLSFLAIFSILLLVLLRDRHAFILCSWLHFFAFVF 123


>AF100663-3|AAC68980.1|  529|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein20 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +1

Query: 187 FFFLEPFAIFISVFRFFLFISF---DFACKFCL 276
           +FFL+  AIFI +   FL++SF    FA + C+
Sbjct: 485 YFFLDIIAIFILITLIFLYVSFRIVKFAFRKCI 517


>Z92804-1|CAB07252.1|  338|Caenorhabditis elegans Hypothetical
           protein K05D4.2 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 21/57 (36%), Positives = 28/57 (49%)
 Frame = +2

Query: 584 LALLSLPFIYSYTCKIQPSHITRPICS*RSPLLTPSLYISNFKTYIFLYRYISTGES 754
           LALL++ F Y Y C   P  + R   S R+  L   L +SNF  + F   YI  G +
Sbjct: 106 LALLTIHFYYRYICVACPKKLLR--FSLRNCFLWILLVLSNFSIW-FYCCYIWNGSN 159


>U39678-6|AAK39206.1|  208|Caenorhabditis elegans Hypothetical
           protein C39D10.2 protein.
          Length = 208

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 154 IVVILWIRIFTFFFLEPFAIFISVF 228
           I+ + + RIF +FF+  F+IF +VF
Sbjct: 64  ILSLTFFRIFKYFFVSYFSIFFNVF 88


>U28943-11|AAK68295.1|  319|Caenorhabditis elegans Hypothetical
           protein E04F6.15 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +3

Query: 732 GIYRPEKAETCN---SHFGLNHL*LYSCIKKLLNV 827
           G++ P +  T +   +HFG+NHL  +  IK+LL V
Sbjct: 116 GVFGPSEKTTSDGFEAHFGINHLAHFILIKELLPV 150


>AL110482-9|CAB60340.3|  372|Caenorhabditis elegans Hypothetical
           protein Y39G8B.4 protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 169 WIRIFTFFFLEPFAIFISVFRFFLFISFDF 258
           WI +   FF + F +  S+  FF ++S+ F
Sbjct: 172 WIALLIIFFSQTFTMIFSIVFFFNYLSYVF 201


>Z99278-6|CAD59170.1|  276|Caenorhabditis elegans Hypothetical
           protein Y53C12B.5b protein.
          Length = 276

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = +2

Query: 290 TFLGFPLLKNRFELIVS**MIFGKFTLFILFLGVLIFSN 406
           + L FP   N F  +VS  MIF  F  F LF   +IFSN
Sbjct: 155 SLLNFP--HNLFLSLVSNSMIFSYFLEFSLFTNFVIFSN 191


>Z47068-4|CAA87332.1|  153|Caenorhabditis elegans Hypothetical
           protein F15G9.2 protein.
          Length = 153

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = -2

Query: 151 TFHDSKYQNNRYLNILREKEACFQETIRRDSRSELG*NSCGSSNEKKKK 5
           +  +  + NN Y  +LR+   C Q+ +   + + L        N  KKK
Sbjct: 65  SLEEVSFSNNSYFILLRQVSQCMQDRLNAGTENILETGEVSDENSLKKK 113


>U88182-2|AAB42308.4|  961|Caenorhabditis elegans Patched related
           family protein 5 protein.
          Length = 961

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 106 KCLNIDCFDISNRGTLIVVILWIRIFTFF 192
           KC+N+ C  +SN+   +VV+L   I+ +F
Sbjct: 513 KCINVYCKILSNKFFAVVVMLGTAIYWYF 541


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,034,501
Number of Sequences: 27780
Number of extensions: 346863
Number of successful extensions: 942
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)