Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1729
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    27   2.6  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    25   8.1  

>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/79 (21%), Positives = 36/79 (45%)
 Frame = -2

Query: 362 H*NKTLNEINTQLVSE*SQK*TDKIVYYAPREKSRTSRPRIVLSRVLLFSLGVYTFFFKR 183
           H N+  +  +   +S  S K T+K V     +    +  R+V+  + +F   +YTFF   
Sbjct: 44  HYNRRRSSYSASSLSSLSSKPTEKEVPTRNEKPKHANIMRVVVYWIRVFLKRIYTFFVHS 103

Query: 182 DEKFAFSPWHSGQKYSILS 126
              F +   +  +++++ S
Sbjct: 104 ARVFLYHFLNEEKEFTLAS 122


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 519 LFALTLTLSLGGV*YITNLTFIVIQFQSN*NFMYDFWYS 403
           +F   L L  GG+  I  +  +++ F +   F +D W+S
Sbjct: 246 VFYFVLALFCGGIGTIIGVDDLLVSFCAGAAFSWDSWFS 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,897
Number of Sequences: 5004
Number of extensions: 42448
Number of successful extensions: 115
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)