Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1729
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0032 + 17380349-17381088,17382720-17382746,17382870-173830...    29   2.0  
10_08_0356 + 17141107-17141165,17141502-17141650,17141748-171419...    28   6.2  
07_03_0898 - 22403337-22404950                                         27   8.2  

>01_05_0032 +
           17380349-17381088,17382720-17382746,17382870-17383038,
           17383259-17383327,17385364-17385699
          Length = 446

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -3

Query: 274 RGRKVEHHARELFCRGFYFSP*VFI-HFFLNGMKSSLLVPGTRDKSTRFSPGERTF-HPG 101
           RG+K+  H  E+ CRG       ++     NGM+   LV G R     F    R F H G
Sbjct: 195 RGKKIYAHQTEVGCRGEVLEIDTWVGSSGKNGMRRDWLVRG-RSSGAIFVRATRRFSHLG 253

Query: 100 GKK 92
           GK+
Sbjct: 254 GKR 256


>10_08_0356 +
           17141107-17141165,17141502-17141650,17141748-17141969,
           17142051-17142187,17142319-17142570,17143915-17144063,
           17144476-17144540,17144633-17144701,17145014-17145144,
           17145218-17145505,17145669-17145811,17145898-17145951,
           17146000-17146080,17149048-17149222,17149223-17149647,
           17149929-17150144,17150279-17150309
          Length = 881

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 295 SVYF*LYSETNCVLISF 345
           S+YF LYS  +C+L+SF
Sbjct: 601 SIYFFLYSPCDCILVSF 617


>07_03_0898 - 22403337-22404950
          Length = 537

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +2

Query: 206 HLGRK----VEPATKQFAGVMFYFSPSVRNILFCQFISDFTR 319
           HLGR+    +  AT   AGV+  FSP+V      +F+S F R
Sbjct: 144 HLGRRKMLVLSLATMSVAGVLTAFSPNVWVYAALRFVSGFGR 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,550,080
Number of Sequences: 37544
Number of extensions: 230781
Number of successful extensions: 398
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)