Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1729
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81035-2|CAB02736.1|  379|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF039039-7|AAB94178.1|  437|Caenorhabditis elegans Aldehyde dehy...    27   9.7  

>Z81035-2|CAB02736.1|  379|Caenorhabditis elegans Hypothetical
           protein C15H11.2 protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -3

Query: 538 LILLTMPLCF-NINIKSWWRLIHYESY 461
           L++LT  + +   N+ SWW ++H++SY
Sbjct: 298 LLILTYAVTWLPYNLLSWWMVLHWDSY 324


>AF039039-7|AAB94178.1|  437|Caenorhabditis elegans Aldehyde
           dehydrogenase protein 5 protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 30  IIKPSGLTDVKAILANKLIMFFFPP 104
           +IKPS L++  AIL  KLI  +F P
Sbjct: 136 VIKPSELSENTAILFEKLIPKYFDP 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,558,066
Number of Sequences: 27780
Number of extensions: 237732
Number of successful extensions: 508
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)