Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1729
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   6.7  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   8.9  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   8.9  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 171 ELFIPFKKKCINT*GEK*NPRQNNSR 248
           ++ I   K CI T G +  PR++  R
Sbjct: 264 QILIRMNKLCIQTIGGQIKPRKHEQR 289


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 73  QIN*LCFFSPRDEKFSHRERIEYFCPECQGLKANFSS 183
           ++N   F S  D +   ++R   FC +  G+K  F+S
Sbjct: 128 ELNGEVFPSKMDHQLPLKQRSSEFCGKNIGMKRIFTS 164


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 114 LFIPGGKKT 88
           +F PGGKKT
Sbjct: 243 IFFPGGKKT 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,267
Number of Sequences: 438
Number of extensions: 2655
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)