Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1728X
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    27   1.6  
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    25   4.8  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    25   8.4  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   8.4  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   8.4  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   8.4  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   8.4  

>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = -2

Query: 352 H*NKTLNEINTQLVSE*SQK*TDKIVYYAPREKVEHSR-PRIVLSRVLLFSLGVYTFFFK 176
           H N+  +  +   +S  S K T+K V     EK +H+   R+V+  + +F   +YTFF  
Sbjct: 44  HYNRRRSSYSASSLSSLSSKPTEKEVP-TRNEKPKHANIMRVVVYWIRVFLKRIYTFFVH 102

Query: 175 RDEKFAFSPWHSGQKYSILS 116
               F +   +  +++++ S
Sbjct: 103 SARVFLYHFLNEEKEFTLAS 122


>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +1

Query: 115 GRESSTFVPSARD*KRTFHPV*KKMYKHLGRKVEPATKQFAGVNVLLSPSVRNILFCQFI 294
           G  S+ FV   R  K+ F        KH   K++    +     VLL  S+ + L C+F 
Sbjct: 39  GSWSTVFVVKHRQTKQRFALKCINKKKHDEHKIKKLRNE-----VLLLQSLNHPLLCKFY 93

Query: 295 SDFTRKPTVY 324
           S+F  +  +Y
Sbjct: 94  SEFEDETKIY 103


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 281 FVSLFLTLLGNQLCIDFVQGFILMHTKP*RNLFKNFSH 394
           FV + L  +  +    FV  F L  T P RN+FKN +H
Sbjct: 123 FVLVMLHFMKREYESIFVHRFSLA-TMPLRNIFKNCAH 159


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 96  PGGKKNIINLFAKMAFTSVSPLGCIM 19
           PG K+N ++ F  +  T VSP G ++
Sbjct: 143 PGNKQNTVDSFRPLPETPVSPGGSLV 168


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 91  PGMKSSLTGRESSTFVPSARD 153
           PG  SS  G   STF PS  D
Sbjct: 495 PGYSSSFDGSSQSTFNPSNND 515


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 332 VQGFILMHTKP*RNLFKNFSHCTRNHT*NFNLTE 433
           V  F+L H+K   N+  NFS   RN   + +LT+
Sbjct: 682 VVDFLLKHSKTIENVSSNFSKKNRNVVVSESLTK 715


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 35  GLTDVKAILANKLIMFFFPPG*KVLSPGENRVLLSRVPGTKSELFIPFK 181
           G +++   + +K  + F P G  +LSP  NRV +  +    S  F PF+
Sbjct: 6   GFSNLVGTIFSKGNLVFTPDGFSILSPVGNRVSVYNLKDNTSYTF-PFE 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,983,276
Number of Sequences: 5004
Number of extensions: 40033
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)