Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1728X
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0356 + 17141107-17141165,17141502-17141650,17141748-171419...    28   4.8  
08_02_0934 + 22747742-22748644                                         27   8.4  
01_05_0032 + 17380349-17381088,17382720-17382746,17382870-173830...    27   8.4  

>10_08_0356 +
           17141107-17141165,17141502-17141650,17141748-17141969,
           17142051-17142187,17142319-17142570,17143915-17144063,
           17144476-17144540,17144633-17144701,17145014-17145144,
           17145218-17145505,17145669-17145811,17145898-17145951,
           17146000-17146080,17149048-17149222,17149223-17149647,
           17149929-17150144,17150279-17150309
          Length = 881

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 285 SVYF*LYSETNCVLISF 335
           S+YF LYS  +C+L+SF
Sbjct: 601 SIYFFLYSPCDCILVSF 617


>08_02_0934 + 22747742-22748644
          Length = 300

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 180 LNGMKSSLLVPGTRDKSTRFSPGERTFHPGGKKNI 76
           L G  S+   P T   S+  SP ER   P  K+N+
Sbjct: 260 LGGAGSTSFSPSTSSSSSSASPHERRAQPARKENV 294


>01_05_0032 +
           17380349-17381088,17382720-17382746,17382870-17383038,
           17383259-17383327,17385364-17385699
          Length = 446

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -3

Query: 264 RGRK*NIHARELFCRGFYFSP*VFIHFF-LNGMKSSLLVPGTRDKSTRFSPGERTF-HPG 91
           RG+K   H  E+ CRG       ++     NGM+   LV G R     F    R F H G
Sbjct: 195 RGKKIYAHQTEVGCRGEVLEIDTWVGSSGKNGMRRDWLVRG-RSSGAIFVRATRRFSHLG 253

Query: 90  GKK 82
           GK+
Sbjct: 254 GKR 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,744,110
Number of Sequences: 37544
Number of extensions: 215944
Number of successful extensions: 345
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)