Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1728X
         (497 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M30140-1|AAA28380.1|  364|Drosophila melanogaster protein ( D.me...    30   1.5  
AY061824-1|AAL27635.1|  364|Drosophila melanogaster GH19095p pro...    30   1.5  
AE014134-2899|AAF53644.1|  364|Drosophila melanogaster CG5711-PA...    30   1.5  
M23391-1|AAA28487.1|  868|Drosophila melanogaster DNA-binding pr...    28   8.1  
AY058690-1|AAL13919.1|  869|Drosophila melanogaster LD40824p pro...    28   8.1  
AE014297-4265|AAF56815.1|  869|Drosophila melanogaster CG1454-PA...    28   8.1  

>M30140-1|AAA28380.1|  364|Drosophila melanogaster protein (
           D.melanogaster arrestin(Arr) gene, complete cds. ).
          Length = 364

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +2

Query: 284 VSLFLTLLGNQLCIDFVQGFILMHTKP*R 370
           V LFL  LG +LC +    FILMH KP R
Sbjct: 326 VKLFLGALGGELCAEL--PFILMHPKPSR 352


>AY061824-1|AAL27635.1|  364|Drosophila melanogaster GH19095p
           protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +2

Query: 284 VSLFLTLLGNQLCIDFVQGFILMHTKP*R 370
           V LFL  LG +LC +    FILMH KP R
Sbjct: 326 VKLFLGALGGELCAEL--PFILMHPKPSR 352


>AE014134-2899|AAF53644.1|  364|Drosophila melanogaster CG5711-PA
           protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +2

Query: 284 VSLFLTLLGNQLCIDFVQGFILMHTKP*R 370
           V LFL  LG +LC +    FILMH KP R
Sbjct: 326 VKLFLGALGGELCAEL--PFILMHPKPSR 352


>M23391-1|AAA28487.1|  868|Drosophila melanogaster DNA-binding
           protein protein.
          Length = 868

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 93  RDEKFSHRERIEYFCPECQGLKANFSSRLKKNV*TPREKSR 215
           + E  +HR R+ Y C ECQ  +    + LKK++ T R + R
Sbjct: 286 KHEAAAHRLRLTYRCSECQ-REFELLAGLKKHLKTHRTEGR 325


>AY058690-1|AAL13919.1|  869|Drosophila melanogaster LD40824p
           protein.
          Length = 869

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 93  RDEKFSHRERIEYFCPECQGLKANFSSRLKKNV*TPREKSR 215
           + E  +HR R+ Y C ECQ  +    + LKK++ T R + R
Sbjct: 287 KHEAAAHRLRLTYRCSECQ-REFELLAGLKKHLKTHRTEGR 326


>AE014297-4265|AAF56815.1|  869|Drosophila melanogaster CG1454-PA
           protein.
          Length = 869

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 93  RDEKFSHRERIEYFCPECQGLKANFSSRLKKNV*TPREKSR 215
           + E  +HR R+ Y C ECQ  +    + LKK++ T R + R
Sbjct: 287 KHEAAAHRLRLTYRCSECQ-REFELLAGLKKHLKTHRTEGR 326


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,238,572
Number of Sequences: 53049
Number of extensions: 386286
Number of successful extensions: 758
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1763278080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)