Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1728X
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82277-1|CAB05248.1|  648|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U12921-1|AAB60256.1|  648|Caenorhabditis elegans sex determinati...    27   10.0 

>Z82277-1|CAB05248.1|  648|Caenorhabditis elegans Hypothetical
           protein LLC1.1 protein.
          Length = 648

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 274 YYAPREKVEHSRPRIVLSRVLLFSLGVYTFFFKRDEKFAFSPWHSGQKYS 125
           ++ P E   H    I L +  LF+  V++F    DE+  FS W +  K S
Sbjct: 333 FWMPWESFVHYFTDISLCQ--LFNTSVFSFSRSYDEQIVFSEWTTNGKKS 380


>U12921-1|AAB60256.1|  648|Caenorhabditis elegans sex determination
           protein.
          Length = 648

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 274 YYAPREKVEHSRPRIVLSRVLLFSLGVYTFFFKRDEKFAFSPWHSGQKYS 125
           ++ P E   H    I L +  LF+  V++F    DE+  FS W +  K S
Sbjct: 333 FWMPWESFVHYFTDISLCQ--LFNTSVFSFSRSYDEQIVFSEWTTNGKKS 380


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,874,116
Number of Sequences: 27780
Number of extensions: 223103
Number of successful extensions: 477
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)