Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1728X
         (497 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   5.4  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   5.4  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   7.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   7.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.4  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 253 LSPSVRNILFCQFISDFTRKPTVY 324
           ++P +  I   QF+ D    PTVY
Sbjct: 80  IAPYLNQIYGGQFVRDLIWTPTVY 103


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 161 ELFIPFKKKCINT*GEK*NPRQNNSR 238
           ++ I   K CI T G +  PR++  R
Sbjct: 264 QILIRMNKLCIQTIGGQIKPRKHEQR 289


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 63  QIN*LCFFSPRDEKFSHRERIEYFCPECQGLKANFSS 173
           ++N   F S  D +   ++R   FC +  G+K  F+S
Sbjct: 128 ELNGEVFPSKMDHQLPLKQRSSEFCGKNIGMKRIFTS 164


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 104 LFIPGGKKT 78
           +F PGGKKT
Sbjct: 243 IFFPGGKKT 251


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -3

Query: 150  PGTRDKSTRFSPGERTFHPGG 88
            PGT D   +  P +    PGG
Sbjct: 1117 PGTADNKPQLKPQKPFTSPGG 1137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,127
Number of Sequences: 438
Number of extensions: 2632
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)