Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1726
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.3  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    27   3.3  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    26   4.3  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   4.3  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   4.3  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   9.9  

>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +3

Query: 393 LQQIHLFCYIMYHKCNNI----YYYIL*LCNFVLLCRVPYQIRFSG 518
           L+ +H+ C    HKC+NI    ++  L     V+   +P  I F+G
Sbjct: 543 LENVHILCDYCKHKCSNIMEQDWFVQLARARGVIPLHIPIVIWFNG 588


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 524 KPSTSQHEDEISIILSNGCPTSKSERMPISRP 619
           KP   +++ E S++L +  P  KSE    S+P
Sbjct: 461 KPPVPENKAEDSVVLKSSVPEDKSENSIASKP 492


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 371 VINLFIILKRYSFLFTSMFFCNKT 300
           VINLF+  +++S+LFT +    K+
Sbjct: 210 VINLFLFYEKFSYLFTHLLSAIKS 233


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +3

Query: 21  INKSL*HKTNVVQLSRLKCRAFIGTHRIQFIIIDCCLSIVSCKMMFCNIL 170
           +N++L  + N  +LS +  + +I   R+  ++I     IV C    C+++
Sbjct: 13  LNRNL-LEANKYKLSEITFKVYISIRRLLIVVITLYRRIVECCASLCSLI 61


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 196 ITSIRKCKKKFKITSLPKYIV--NYYSLKFLLLQIKFVLLQKNMLVNKKEYLFK 351
           + ++ KC+  +  T  P      N Y  + +L QIK++ LQ+N+ + +  + ++
Sbjct: 597 VETLMKCQPSYIRTIKPNQTKSPNDYDQQMVLHQIKYLGLQENIRIRRAGFAYR 650


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 208 RKCKKKFKITSLPKYIVNYYSLKFLLLQIKFVLLQKN 318
           +K  K++   +L KY+   + + F+  +  F LLQK+
Sbjct: 233 KKSLKQYSPVNLEKYLTKSWLIGFIEAEGSFYLLQKS 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,260
Number of Sequences: 5004
Number of extensions: 50389
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)