Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1726
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50071-1|AAA93442.1|   87|Caenorhabditis elegans Hypothetical pr...    32   0.43 
AC006769-1|AAF60590.2|  287|Caenorhabditis elegans Hypothetical ...    31   0.75 
AC006722-17|ABP57812.1|  141|Caenorhabditis elegans Hypothetical...    31   0.75 
U88167-9|AAK68288.1|  890|Caenorhabditis elegans Hypothetical pr...    27   1.6  
U88167-10|AAB42222.1|  804|Caenorhabditis elegans Hypothetical p...    27   1.6  
Z83106-3|CAB05495.2|  339|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical ...    29   3.0  
U41542-13|ABO16442.1|  390|Caenorhabditis elegans Hsn abnormal m...    28   6.9  
U41542-12|ABO16443.1|  392|Caenorhabditis elegans Hsn abnormal m...    28   6.9  
Z70750-2|CAA94737.1|  756|Caenorhabditis elegans Hypothetical pr...    27   9.2  
L16559-6|AAA27931.1|  397|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF039044-1|AAG24127.1|  272|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U50071-1|AAA93442.1|   87|Caenorhabditis elegans Hypothetical
           protein B0350.3 protein.
          Length = 87

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 18/55 (32%), Positives = 33/55 (60%)
 Frame = +1

Query: 196 ITSIRKCKKKFKITSLPKYIVNYYSLKFLLLQIKFVLLQKNMLVNKKEYLFKIIN 360
           + +++K  KK+ I +LPK  V + ++KF  L+ +F+   K     KK+  F+I+N
Sbjct: 2   LLNLQKILKKWVICTLPKPNVTFLAIKFFNLKNEFLFFSK---FCKKQPKFEILN 53


>AC006769-1|AAF60590.2|  287|Caenorhabditis elegans Hypothetical
           protein Y45G12C.8 protein.
          Length = 287

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 23/69 (33%), Positives = 36/69 (52%)
 Frame = -3

Query: 359 FIILKRYSFLFTSMFFCNKTNFICNNRNFKL**FTIYFGKLVILNFFLHFLIEVIFHCVS 180
           F+ L   SF+  S+F+C + +    NR+  L  F   FG   I+ FF+ F +E+     S
Sbjct: 17  FLALYLNSFILFSIFYCKRAHV---NRSMILIYFK--FGLDAIIMFFM-FFVEIYNLSTS 70

Query: 179 YQAEDITKH 153
           Y+   ITK+
Sbjct: 71  YRVNLITKN 79


>AC006722-17|ABP57812.1|  141|Caenorhabditis elegans Hypothetical
           protein Y19D10A.17 protein.
          Length = 141

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 23/69 (33%), Positives = 36/69 (52%)
 Frame = -3

Query: 359 FIILKRYSFLFTSMFFCNKTNFICNNRNFKL**FTIYFGKLVILNFFLHFLIEVIFHCVS 180
           F+ L   SF+  S+F+C + +    NR+  L  F   FG   I+ FF+ F +E+     S
Sbjct: 17  FLALYLNSFILFSIFYCKRAHV---NRSMILIYFK--FGLDAIIMFFM-FFVEIYNLSTS 70

Query: 179 YQAEDITKH 153
           Y+   ITK+
Sbjct: 71  YRVNLITKN 79


>U88167-9|AAK68288.1|  890|Caenorhabditis elegans Hypothetical
           protein D2092.1b protein.
          Length = 890

 Score = 26.6 bits (56), Expect(2) = 1.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 392 CS*ESN*VINLFIILKRYSFLFTSMFFC 309
           C    N  IN+F+ ++ + FL+ S+F C
Sbjct: 508 CRTRDNCKINIFVKIEPFCFLYASLFNC 535



 Score = 21.8 bits (44), Expect(2) = 1.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 212 FLIEVIFHCVSYQAEDITKHHF 147
           FL   +F+C+ + AED+    F
Sbjct: 527 FLYASLFNCLVFGAEDLVAKDF 548


>U88167-10|AAB42222.1|  804|Caenorhabditis elegans Hypothetical
           protein D2092.1a protein.
          Length = 804

 Score = 26.6 bits (56), Expect(2) = 1.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 392 CS*ESN*VINLFIILKRYSFLFTSMFFC 309
           C    N  IN+F+ ++ + FL+ S+F C
Sbjct: 422 CRTRDNCKINIFVKIEPFCFLYASLFNC 449



 Score = 21.8 bits (44), Expect(2) = 1.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 212 FLIEVIFHCVSYQAEDITKHHF 147
           FL   +F+C+ + AED+    F
Sbjct: 441 FLYASLFNCLVFGAEDLVAKDF 462


>Z83106-3|CAB05495.2|  339|Caenorhabditis elegans Hypothetical
           protein F22B8.4 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 220 KKFKITSLPKYIVNY--YSLKFLLLQIKFVLLQKNMLVNKKEY 342
           +KF  +  PKY+ N+  Y  K L+L + F L     LV +K +
Sbjct: 132 RKFDYSKYPKYVENWMEYRFKALILAVSFGLKMVTELVLRKRF 174


>AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.4 protein.
          Length = 1100

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 254 IYFGKLVILNFFLHFLIEVIFHCVSYQAEDITKH 153
           + F K++I+NFFLHF +  +   V+  +  +T +
Sbjct: 344 LLFRKIMIINFFLHFCVGSLIAAVTGVSSGVTTY 377


>U41542-13|ABO16442.1|  390|Caenorhabditis elegans Hsn abnormal
           migration protein2, isoform a protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 144 CKMMFCNILSLIRHAMEYHF 203
           C+ +FC+  SL RH M+ HF
Sbjct: 21  CQKVFCHSSSLSRHRMQAHF 40


>U41542-12|ABO16443.1|  392|Caenorhabditis elegans Hsn abnormal
           migration protein2, isoform b protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 144 CKMMFCNILSLIRHAMEYHF 203
           C+ +FC+  SL RH M+ HF
Sbjct: 21  CQKVFCHSSSLSRHRMQAHF 40


>Z70750-2|CAA94737.1|  756|Caenorhabditis elegans Hypothetical
           protein C50F4.2 protein.
          Length = 756

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 633 HPSYFGREIGIRSDLLVGQPLLNIIEISS-SCCEV 532
           HPS F R++GIR  +   + ++N +++    CC +
Sbjct: 670 HPSCFDRQMGIRMGVRAFEGIVNPVKMGDRDCCVI 704


>L16559-6|AAA27931.1|  397|Caenorhabditis elegans Hypothetical
           protein C06E1.8 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 144 CKMMFCNILSLIRHAMEYHF 203
           C  +FC+  SL RH M+ HF
Sbjct: 56  CSKVFCHSSSLSRHRMQAHF 75


>AF039044-1|AAG24127.1|  272|Caenorhabditis elegans Hypothetical
           protein F48G7.13 protein.
          Length = 272

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 248 FGKLVILNFFLHFLIEVI 195
           F K  I+NFFLHFL + +
Sbjct: 211 FSKTKIINFFLHFLFQFV 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,227,870
Number of Sequences: 27780
Number of extensions: 282489
Number of successful extensions: 673
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)