Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1726
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.6  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   2.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   6.1  

>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 602 MPISRPK*LGWWYLATDADLIHP 670
           +P  R K LGW      +DL+HP
Sbjct: 22  VPSMREKFLGWNVPPEYSDLVHP 44


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 138 VSCKMMFCNILSLIRHAMEYH 200
           V C+ ++C+  SL+ H   YH
Sbjct: 39  VICERVYCSRNSLMTHIYTYH 59


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 493 CPTKFGSVVTEAIHL 537
           CPT  G+ V  ++H+
Sbjct: 270 CPTNLGTTVRASVHI 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,353
Number of Sequences: 438
Number of extensions: 3686
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)