Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1723
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    36   0.009
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    31   0.25 
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    29   0.58 
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    27   2.3  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    27   2.3  
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   4.1  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    27   4.1  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   5.4  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    26   5.4  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    26   7.1  
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...    26   7.1  

>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = +3

Query: 189 RTHSPSNYSQSLRLDNV*L--MESTALQGSSINVP*SKILLIRALYKSFREKGWAPHQTP 362
           RTHS SN+ ++    ++ L  +E+T  QGS+I  P  K+ +  +   S R  G+A     
Sbjct: 135 RTHSGSNHHEASSTGHLNLPPLENTLSQGSAITAPSRKVSITSSNGVSARLSGYA-FANS 193

Query: 363 ERQRNIFRIFSHL 401
           +R R+  RIF  L
Sbjct: 194 KRNRDFHRIFKVL 206


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -3

Query: 775 PQGSVLSPLLYNIYSHE 725
           PQGS++SP+L NIY H+
Sbjct: 422 PQGSIVSPILANIYLHQ 438


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -3

Query: 541 IFTYEASSISVVFYNNIRVPVKSEATFLGVILDSRLTGSPHCYYISD-KCEKILNILR 371
           +  ++  S S    N+ ++ VKSE        D  LT SP+ Y+ S  + EK L + R
Sbjct: 29  LLNFKLKSPSYYLLNSFKLLVKSEGNNQSTTADVTLTKSPNAYHASSAREEKDLQVSR 86


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -1

Query: 699 VNTLQYADDLLLYVSGDSIDNMSDTVTYSLKLLKVWLDNNSLSLSVPKSIIVLFS 535
           +NTL Y +     VS D +   S TV     L   WL   SLS +  + + +L S
Sbjct: 337 INTLLYVNKEKSIVSYDLLRAQSTTVASVKHLGSAWLPPRSLSYNPAEKVALLTS 391


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 229 WIMSNLWRALHYRVQV*MFHSPKYSLLGHYTKALERK 339
           W M N WR L++   + +F  P  ++ G +T  L+ K
Sbjct: 53  WTMQNWWRHLNWLHCMLIFGLPMIAIYGVFTTPLQTK 89


>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 624 VTYSLKLLKVWLDNNSLSLSVPKSIIVLFSRMRLPPSVSYFIITLEFLL 478
           V Y++ L K +  N +   S  K     F+R+ L  +V YFI+ L  L+
Sbjct: 64  VAYAIVLYKTYSPNLTSRASWNKHF---FARLMLDDNVQYFILALSMLI 109


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 293 GLWNIYT*TL*CSALHKL-DIIQSKALRI 210
           GLWN+Y  T   S LHK+  I+ SK L +
Sbjct: 75  GLWNLYESTHDISELHKITPILASKFLEL 103


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
 Frame = -1

Query: 750  YFTIYILMNLEASLRGKVNT--LQYADDLL-LYVSGDSIDNMSDTVTYSLKLLKVWLDNN 580
            YF    ++NL  +   ++ +   Q   DL  L+VSG+ + N+S + T  + L  ++ + N
Sbjct: 828  YFKCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSGNELANLSISSTAQVLLETLYANGN 887

Query: 579  SLSLSVPKS 553
             LS S PK+
Sbjct: 888  RLS-SFPKN 895


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 113 FLFRAFQVYNHPLYTKLRSLLECMDYPYWAHKS 15
           F+F A Q YN   Y ++ S L   + P+W+  S
Sbjct: 393 FIFVAQQTYNALGYAQVVSDLNSTELPFWSDSS 425


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 544 LIFTYEASSISVVFYNNIRVPVKSEATFLGVI 449
           LI  ++ +S    FY    + + SE+TFLG++
Sbjct: 16  LIIKFDTNSSRYPFYKKHLLELNSESTFLGLL 47


>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 111 KPVTKKLSSEVQGGFRTFDLQSVNRARTHS 200
           KPV + L SEV      F ++ + RAR H+
Sbjct: 169 KPVLETLMSEVTSKGYVFQMEIIARAREHN 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,338,189
Number of Sequences: 5004
Number of extensions: 69310
Number of successful extensions: 189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)