Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1723
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0097 + 20062385-20062745,20063374-20063613,20063831-200641... 30 1.8
11_06_0442 - 23622633-23623000,23623149-23623721,23624795-236253... 30 2.4
11_01_0470 + 3645010-3647686,3647804-3648168 30 2.4
05_01_0061 - 422914-423027,423114-423149,423250-423324,423412-42... 30 2.4
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 29 3.2
01_01_0361 + 2838979-2841745,2841897-2842285 29 3.2
03_02_0012 - 4914223-4914468,4914511-4914587,4914671-4914732,491... 29 4.2
11_06_0211 + 21305535-21305895,21306512-21306761,21307543-213076... 29 5.6
09_04_0519 - 18276797-18276874,18277214-18277419,18277527-182776... 28 7.4
06_01_0689 + 5028932-5031013 28 7.4
02_01_0408 - 2972240-2975380 28 7.4
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495 28 9.8
>11_06_0097 +
20062385-20062745,20063374-20063613,20063831-20064102,
20064304-20064315
Length = 294
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = -3
Query: 175 LCRSNVLKPPCTSDDNFFVTGFYLEHSKFIIILFTLSYGLCWNVWIIRTGLINRR 11
LC ++LK C +D G Y +H + + + F L G +W++ + L+ ++
Sbjct: 226 LC-GDILKKKCPGNDASNDYGSYKDHYELLYLCFGLVIGFVLGLWVVFSTLLFKK 279
>11_06_0442 -
23622633-23623000,23623149-23623721,23624795-23625335,
23625807-23625982,23626081-23626804
Length = 793
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 627 TVTYSLKLLKVWLDNNSLSLSVPKSIIVLFSRMRLPPSV 511
++T +L +WLD N L +P SI L +++P S+
Sbjct: 267 SLTNCTQLTNLWLDRNKLQGIIPSSITNLSEGLKIPTSL 305
>11_01_0470 + 3645010-3647686,3647804-3648168
Length = 1013
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -1
Query: 714 SLRGKV-NTLQYADDL-LLYVSGDSIDNMSDTVTYSLKLLKVWLDNNSLSLSVP 559
SL G++ ++ Y L LY+S +++ M +T L +WLD+N L +P
Sbjct: 109 SLTGEIPSSFGYLHRLQFLYLSNNTLQGMIPDLTNCSNLKAIWLDSNDLVGQIP 162
>05_01_0061 -
422914-423027,423114-423149,423250-423324,423412-423465,
423554-423620,423912-424025,424114-424215,424220-424269,
424380-424424,424559-424642,424996-425100,425300-425443,
425535-425643,425738-425766
Length = 375
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +1
Query: 118 SQRNCRLRCRGASEHSTCKALI-----GLERIAPAIILRALDWIMSNLW 249
S RN R S ++T K + G ER+APAI++ D+ + LW
Sbjct: 76 SARNARENSSEPSSNTTLKIYVPTNPKGAERLAPAIVVPETDFHLRRLW 124
>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +2
Query: 566 ERLRELLSSQTFSNLREYVTVSDMLSIESPET*RSKSSAYWSVLTLPLREAS 721
E LRE++S F + E V SDML ++ PE +S L+L L+ A+
Sbjct: 1277 EELREIMSQLGFRTITEMVGRSDMLEVD-PEVVKSNEKLENIDLSLILKPAA 1327
>01_01_0361 + 2838979-2841745,2841897-2842285
Length = 1051
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -1
Query: 666 LYVSGDSIDNM--SDTVTYSLKLLKVWLDNNSLSLSVPKSI 550
L +S +S + V S L K++LDNNS+S S+P+ I
Sbjct: 353 LVISDNSFSGQLPNSVVNLSTTLHKLYLDNNSISGSIPEDI 393
>03_02_0012 -
4914223-4914468,4914511-4914587,4914671-4914732,
4914825-4915018,4915153-4915439,4915520-4915646,
4916216-4916446,4917210-4917384,4917461-4917668,
4917745-4917793,4918016-4918300
Length = 646
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 551 ILLGTERLRELLSSQTFSNLREYVTVSDMLSIESPET*RSKSSAYWSVLTLPL 709
I++G ++L+ LL F+N + V+V+ + + ET R +W P+
Sbjct: 203 IVIGLQQLKGLLGLSHFTNRTDVVSVTKAVWVSVHETGRKYKKLFWVSAIAPV 255
>11_06_0211 +
21305535-21305895,21306512-21306761,21307543-21307652,
21308836-21309067,21310233-21310603,21311434-21311507,
21311727-21311880,21312251-21312434,21313066-21313291,
21313704-21314135,21314399-21314456,21314748-21314829,
21315350-21315421,21316594-21316737,21317379-21317457,
21318023-21318105,21318198-21318252,21318488-21318778
Length = 1085
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -3
Query: 484 PVKSEATFLGVILDSRLTGSPHCYYISDKCEKILN 380
P + + +GV++ + GSPH + ISD+ +++
Sbjct: 867 PTRYDMWSVGVVMLELIVGSPHVFQISDRTRALMD 901
>09_04_0519 -
18276797-18276874,18277214-18277419,18277527-18277683,
18278069-18278454,18279291-18279317,18279609-18279720
Length = 321
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 594 WLDNNSLSLSVPKSIIVLFSRMRLPPSVSYFIITLE 487
WLD+ SL + + + I LF+++ + +VSY I +E
Sbjct: 151 WLDSASLPMVLTAAAIALFTKLLMMKNVSYGIGLVE 186
>06_01_0689 + 5028932-5031013
Length = 693
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 606 LLKVWLDNNSLSLSVPKSIIVLFSRMRL 523
L K+WLD+N LS ++P SI S + L
Sbjct: 152 LKKLWLDHNELSGAIPASIAQATSLLEL 179
>02_01_0408 - 2972240-2975380
Length = 1046
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = -1
Query: 726 NLEASLRGKVNTLQYADDLLLYVSGDSIDNM-SDTVTYSLKLLKVWLDNNSLSLSVPKSI 550
NLE ++ G ++ ++ ++L + G++ M DT+ +L ++ LDNN+L +P ++
Sbjct: 263 NLEGNI-GSTPVVKLSNVVVLDLGGNNFSGMIPDTIGQLSRLQELHLDNNNLHGELPSAL 321
>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
Length = 1086
Score = 27.9 bits (59), Expect = 9.8
Identities = 23/75 (30%), Positives = 36/75 (48%)
Frame = -1
Query: 726 NLEASLRGKVNTLQYADDLLLYVSGDSIDNMSDTVTYSLKLLKVWLDNNSLSLSVPKSII 547
+L S+ L+ A+ L L S ++ + KL + L NN LS +VP SI
Sbjct: 527 SLAGSVPSNAGMLKNAEKLFLQ-SNKLSGSIPKDMGNLTKLEHLVLSNNQLSSTVPPSIF 585
Query: 546 VLFSRMRLPPSVSYF 502
L S ++L S ++F
Sbjct: 586 HLSSLIQLDLSHNFF 600
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,172,798
Number of Sequences: 37544
Number of extensions: 418640
Number of successful extensions: 995
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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