Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1723
(792 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 44 3e-04
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 44 3e-04
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 44 3e-04
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 39 0.007
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 37 0.027
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 34 0.19
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 33 0.45
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 32 0.78
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 31 1.8
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 31 1.8
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 31 1.8
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 31 1.8
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 31 1.8
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 31 1.8
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 31 1.8
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 30 3.2
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 30 3.2
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 30 3.2
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 30 3.2
U14102-1|AAC46495.1| 299|Drosophila melanogaster putative rever... 30 4.2
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 30 4.2
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 29 7.3
AY061403-1|AAL28951.1| 1486|Drosophila melanogaster LD33266p pro... 29 9.6
AE014297-1818|AAF55034.1| 289|Drosophila melanogaster CG9624-PA... 29 9.6
AE014296-3600|AAF51764.1| 1486|Drosophila melanogaster CG7158-PA... 29 9.6
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 43.6 bits (98), Expect = 3e-04
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Frame = -3
Query: 556 KYYSLIFTYEASSISVVFYNNIRVPVKSEATFLGVILDSRLTGSPHCYYISDKCEKILNI 377
K + FT + + NNI +P E T+LGV LD RLT H I K + +
Sbjct: 707 KCKQVTFTLNKQTCPPLVLNNICIPQADEVTYLGVHLDRRLTWRKH---IEAKSKHLKLK 763
Query: 376 LRCLSGVWWGAHPFSLK---LLYNALIRSILDYGT 281
R L + P SL+ LLYN++++ I YG+
Sbjct: 764 ARNLHWLINARSPLSLEFKALLYNSVLKPIWTYGS 798
Score = 29.1 bits (62), Expect = 7.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 790 LEKVYPQGSVLSPLLYNIYS 731
+E PQGSVL P+LY +Y+
Sbjct: 632 IEAGVPQGSVLGPILYTLYT 651
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 43.6 bits (98), Expect = 3e-04
Identities = 21/75 (28%), Positives = 40/75 (53%)
Frame = -3
Query: 499 NNIRVPVKSEATFLGVILDSRLTGSPHCYYISDKCEKILNILRCLSGVWWGAHPFSLKLL 320
NN ++P + LG+ L+++ + H + K LNI++CLS + + + +L +
Sbjct: 727 NNFQIPSVTSLKILGITLNNKYKWNTHINLLLPKLHNKLNIIKCLSSLKFNCNTHTLLNV 786
Query: 319 YNALIRSILDYGTFI 275
A I + L+YG F+
Sbjct: 787 AKATIIAKLEYGLFL 801
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 43.6 bits (98), Expect = 3e-04
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Frame = -3
Query: 556 KYYSLIFTYEASSISVVFYNNIRVPVKSEATFLGVILDSRLTGSPHCYYISDKCEKILNI 377
K + FT + + NNI +P E T+LGV LD RLT H I K + +
Sbjct: 707 KCKQVTFTLNKQTCPPLVLNNICIPQADEVTYLGVHLDRRLTWRKH---IEAKSKHLKLK 763
Query: 376 LRCLSGVWWGAHPFSLK---LLYNALIRSILDYGT 281
R L + P SL+ LLYN++++ I YG+
Sbjct: 764 ARNLHWLINARSPLSLEFKALLYNSVLKPIWTYGS 798
Score = 29.1 bits (62), Expect = 7.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 790 LEKVYPQGSVLSPLLYNIYS 731
+E PQGSVL P+LY +Y+
Sbjct: 632 IEAGVPQGSVLGPILYTLYT 651
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 39.1 bits (87), Expect = 0.007
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Frame = -3
Query: 538 FTYEASSISVVFYNNIRVPVKSEATFLGVILDSRLTGSPHCYYISDKCEKILNILRCLSG 359
FT + N+I +P E T+LGV LD RLT H + + N L L
Sbjct: 715 FTLNRQDCPPLLLNSIPLPKADEVTYLGVHLDRRLTWRRHIEAKKTQLKLKANNLHWLIN 774
Query: 358 VWWGAHPFSLK---LLYNALIRSILDYGT 281
P SL LLYN++++ I YG+
Sbjct: 775 ---SGSPLSLDHKVLLYNSILKPIWTYGS 800
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 37.1 bits (82), Expect = 0.027
Identities = 23/86 (26%), Positives = 41/86 (47%)
Frame = -3
Query: 520 SISVVFYNNIRVPVKSEATFLGVILDSRLTGSPHCYYISDKCEKILNILRCLSGVWWGAH 341
++S + +N+ + + LG+ D +L HC + + E NI++ LS + H
Sbjct: 729 NLSDIVFNSRTIKDVNFLKILGITFDPKLLFKQHCQTLRKQLETRFNIIKFLSSKYSYIH 788
Query: 340 PFSLKLLYNALIRSILDYGTFILEPC 263
+L + AL+ S +DYG I C
Sbjct: 789 IKTLIDITRALMLSKIDYGLPIFGWC 814
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 34.3 bits (75), Expect = 0.19
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = -3
Query: 565 SS*KYYSLIFTYEASSISVVFYNNIRVPVKSEATFLGVILDSRLTGSPH 419
+S K ++ FT + + V+ + VP + A +LGV+LD RLT S H
Sbjct: 713 NSSKSNNVCFTLKRRTPPPVYIEEVPVPQPNAAKYLGVLLDRRLTFSKH 761
Score = 33.1 bits (72), Expect = 0.45
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = -3
Query: 775 PQGSVLSPLLYNIYSHE 725
PQGSVL PLLY +YSH+
Sbjct: 641 PQGSVLGPLLYCLYSHD 657
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 33.1 bits (72), Expect = 0.45
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -1
Query: 684 YADDLLLYVSGDSIDNMSDTVTYSLKLLKVWLDNNSLSLSVPKSIIVLF-SRMRLPPSVS 508
YADDLLL V G+S + + + +++ W LS K++I+L +R P+V
Sbjct: 663 YADDLLLLVEGNSRAVLEEKGAQLMSIVETWGAEVGDCLSTSKTVIMLLKGALRRAPTVR 722
Query: 507 Y 505
+
Sbjct: 723 F 723
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 32.3 bits (70), Expect = 0.78
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 475 SEATFLGVILDSRLTGSPHCYYISDKCEKILNILRCL 365
S+A +LG+ LD RLT PH + +C + + LR L
Sbjct: 749 SQAKYLGITLDKRLTFGPHLKATTRRCYQRMQQLRWL 785
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 31.1 bits (67), Expect = 1.8
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = -3
Query: 478 KSEATFLGVILDSRLTGSPH 419
+S+ ++LGVILDS+LT SPH
Sbjct: 678 ESKQSYLGVILDSKLTLSPH 697
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 31.1 bits (67), Expect = 1.8
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = -3
Query: 478 KSEATFLGVILDSRLTGSPH 419
+S+ ++LGVILDS+LT SPH
Sbjct: 794 ESKQSYLGVILDSKLTLSPH 813
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 31.1 bits (67), Expect = 1.8
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -3
Query: 775 PQGSVLSPLLYNIYSHE 725
PQGSVL P L+NI++H+
Sbjct: 667 PQGSVLGPTLFNIFTHD 683
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 31.1 bits (67), Expect = 1.8
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = -3
Query: 478 KSEATFLGVILDSRLTGSPH 419
+S+ ++LGVILDS+LT SPH
Sbjct: 794 ESKQSYLGVILDSKLTLSPH 813
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 31.1 bits (67), Expect = 1.8
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = -3
Query: 478 KSEATFLGVILDSRLTGSPH 419
+S+ ++LGVILDS+LT SPH
Sbjct: 756 ESKQSYLGVILDSKLTLSPH 775
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 31.1 bits (67), Expect = 1.8
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = -3
Query: 478 KSEATFLGVILDSRLTGSPH 419
+S+ ++LGVILDS+LT SPH
Sbjct: 794 ESKQSYLGVILDSKLTLSPH 813
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 31.1 bits (67), Expect = 1.8
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -3
Query: 775 PQGSVLSPLLYNIYSHE 725
PQGSVL P L+NI++H+
Sbjct: 615 PQGSVLGPTLFNIFTHD 631
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 30.3 bits (65), Expect = 3.2
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -3
Query: 775 PQGSVLSPLLYNIYSHE 725
PQGS+L P+LY+IYS +
Sbjct: 243 PQGSILGPVLYSIYSSD 259
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 30.3 bits (65), Expect = 3.2
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -3
Query: 775 PQGSVLSPLLYNIYSHE 725
PQGS+L P+LY+IYS +
Sbjct: 690 PQGSILGPVLYSIYSSD 706
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 30.3 bits (65), Expect = 3.2
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -3
Query: 775 PQGSVLSPLLYNIYSHE 725
PQGS+L P+LY+IYS +
Sbjct: 690 PQGSILGPVLYSIYSSD 706
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 30.3 bits (65), Expect = 3.2
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -3
Query: 775 PQGSVLSPLLYNIYSHE 725
PQGS+L P+LY+IYS +
Sbjct: 690 PQGSILGPVLYSIYSSD 706
>U14102-1|AAC46495.1| 299|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 299
Score = 29.9 bits (64), Expect = 4.2
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = -3
Query: 487 VPVKSEATFLGVILDSRLTGSPH 419
+ ++S+ ++LGVILDS+LT S H
Sbjct: 6 IKIESKQSYLGVILDSKLTLSSH 28
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 29.9 bits (64), Expect = 4.2
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = -3
Query: 487 VPVKSEATFLGVILDSRLTGSPH 419
+ ++S+ ++LGVILDS+LT S H
Sbjct: 791 IKIESKQSYLGVILDSKLTLSSH 813
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 29.1 bits (62), Expect = 7.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 790 LEKVYPQGSVLSPLLYNIYS 731
+E PQGSVL P+LY +Y+
Sbjct: 173 IEAGVPQGSVLGPILYTLYT 192
>AY061403-1|AAL28951.1| 1486|Drosophila melanogaster LD33266p protein.
Length = 1486
Score = 28.7 bits (61), Expect = 9.6
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -2
Query: 113 FLFRAFQVYNHPLYTKLRSLLECM--DYPYWAHKSPPCL 3
+L +AF+ +HPLY + C Y YW K P L
Sbjct: 1227 YLEQAFKDRHHPLYVLNERIANCFHYSYGYWKVKPTPIL 1265
>AE014297-1818|AAF55034.1| 289|Drosophila melanogaster CG9624-PA
protein.
Length = 289
Score = 28.7 bits (61), Expect = 9.6
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 693 TLQYADDLLLYVSGDSIDNM-SDTVTYSLKLLKVWLDNNSLSLSVPKSIIVLFSRMR 526
+LQ + Y+ +S DN D V YSL+ V N L S + + +FSR R
Sbjct: 219 SLQVLNVFHTYLVEESADNSWHDEVQYSLRTAFVHAQKNQLLKSCGEPFVFVFSRFR 275
>AE014296-3600|AAF51764.1| 1486|Drosophila melanogaster CG7158-PA
protein.
Length = 1486
Score = 28.7 bits (61), Expect = 9.6
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -2
Query: 113 FLFRAFQVYNHPLYTKLRSLLECM--DYPYWAHKSPPCL 3
+L +AF+ +HPLY + C Y YW K P L
Sbjct: 1227 YLEQAFKDRHHPLYVLNERIANCFHYSYGYWKVKPTPIL 1265
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,723,637
Number of Sequences: 53049
Number of extensions: 729153
Number of successful extensions: 1760
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1757
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3675273108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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