Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1723
(792 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 31 0.94
Z92784-7|CAE54895.1| 808|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z92784-6|CAB07197.1| 805|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z81526-9|CAE54892.1| 808|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z81526-8|CAB04268.1| 805|Caenorhabditis elegans Hypothetical pr... 30 1.7
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 30 1.7
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 30 1.7
Z78536-2|CAB01716.1| 363|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF025472-3|AAB71075.2| 843|Caenorhabditis elegans Hypothetical ... 28 8.8
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = -2
Query: 251 LHKLDIIQSKALRIIAGAMRSSPINALQVECSEAPLHLRRQFLCDRFLFRAFQVYNHP 78
L KL+I ALR G + +P + + EC PL + + A + HP
Sbjct: 710 LEKLEIAYRSALRACVGLTKDTPTDHIYQECRVLPLKEEYKLATQQMYLAAIKSNTHP 767
>Z92784-7|CAE54895.1| 808|Caenorhabditis elegans Hypothetical
protein F31C3.2b protein.
Length = 808
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = -3
Query: 532 YEASSISVVFYNNIRVPVKSEATFLGVILDSRLTGSPHCYYISDKCEKILNILRCLSGVW 353
Y +F ++PV +A +GV+L+ R+ GS +++ +K N ++ LS +
Sbjct: 409 YNGHQTHQIFREVRQLPVNYQARTIGVVLNERIAGSVE-KFVNSITKKSFNSVKQLSKLA 467
Query: 352 W 350
W
Sbjct: 468 W 468
>Z92784-6|CAB07197.1| 805|Caenorhabditis elegans Hypothetical
protein F31C3.2a protein.
Length = 805
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = -3
Query: 532 YEASSISVVFYNNIRVPVKSEATFLGVILDSRLTGSPHCYYISDKCEKILNILRCLSGVW 353
Y +F ++PV +A +GV+L+ R+ GS +++ +K N ++ LS +
Sbjct: 406 YNGHQTHQIFREVRQLPVNYQARTIGVVLNERIAGSVE-KFVNSITKKSFNSVKQLSKLA 464
Query: 352 W 350
W
Sbjct: 465 W 465
>Z81526-9|CAE54892.1| 808|Caenorhabditis elegans Hypothetical
protein F31C3.2b protein.
Length = 808
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = -3
Query: 532 YEASSISVVFYNNIRVPVKSEATFLGVILDSRLTGSPHCYYISDKCEKILNILRCLSGVW 353
Y +F ++PV +A +GV+L+ R+ GS +++ +K N ++ LS +
Sbjct: 409 YNGHQTHQIFREVRQLPVNYQARTIGVVLNERIAGSVE-KFVNSITKKSFNSVKQLSKLA 467
Query: 352 W 350
W
Sbjct: 468 W 468
>Z81526-8|CAB04268.1| 805|Caenorhabditis elegans Hypothetical
protein F31C3.2a protein.
Length = 805
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = -3
Query: 532 YEASSISVVFYNNIRVPVKSEATFLGVILDSRLTGSPHCYYISDKCEKILNILRCLSGVW 353
Y +F ++PV +A +GV+L+ R+ GS +++ +K N ++ LS +
Sbjct: 406 YNGHQTHQIFREVRQLPVNYQARTIGVVLNERIAGSVE-KFVNSITKKSFNSVKQLSKLA 464
Query: 352 W 350
W
Sbjct: 465 W 465
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -3
Query: 775 PQGSVLSPLLYNIYSHESGSL 713
PQG+VLSPLL+ IY ++ S+
Sbjct: 78 PQGAVLSPLLFGIYVNDISSI 98
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = -3
Query: 499 NNIRVPVKSEATFLGVILDSRLTGSPHCYYISDKCEKILNILRC--LSGVWWGAHPFSLK 326
NN+ + + A LG++ DS+LT PH I L +LRC L + P
Sbjct: 185 NNLPISPSNIARDLGILTDSKLTFKPHIKKIVS-----LALLRCKQLLKSFKSLCPEFYC 239
Query: 325 LLYNALIRSILDYGTFILEP 266
L+ I +++YG+ + P
Sbjct: 240 NLFKTYILPLIEYGSAVYSP 259
>Z78536-2|CAB01716.1| 363|Caenorhabditis elegans Hypothetical
protein C07A4.3 protein.
Length = 363
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 702 KVNTLQYADDLLLYVSGDSIDNMSDTVTYSLKLLKVWL 589
++ L D+++Y+ S+++ D YS+K LK W+
Sbjct: 167 ELTKLTNPSDVMVYMQNKSLEDKLDPAEYSIKDLKKWI 204
>AF025472-3|AAB71075.2| 843|Caenorhabditis elegans Hypothetical
protein ZK250.6 protein.
Length = 843
Score = 27.9 bits (59), Expect = 8.8
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 750 YFTIYILMNLEASLRGKVNTLQYADDLLLYVSGDSIDNMSDTVTY-SLKLLKVW 592
+FT +IL+N S+R V L A DLL D + M + V Y LK +K+W
Sbjct: 54 HFTNWILLNESFSMRRCVENLLVALDLL---EIDMLFVMDEDVIYDELKGIKLW 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,191,181
Number of Sequences: 27780
Number of extensions: 374558
Number of successful extensions: 860
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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