Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1720
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 180 1e-46
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 98 8e-22
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 97 2e-21
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 93 2e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 63 4e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 62 9e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 9e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 37 0.003
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.11
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.43
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 28 1.00
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.7
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 3.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.0
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos... 27 3.0
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 4.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 7.0
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 7.0
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 25 9.3
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 9.3
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 25 9.3
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 25 9.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 180 bits (439), Expect = 1e-46
Identities = 80/88 (90%), Positives = 83/88 (94%)
Frame = +3
Query: 246 GTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 425
G +DSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 426 APLNPKANREKMTQIMFETFNTPAMYVA 509
APLNPK+NREKMTQI+FETFN PA YVA
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYVA 135
Score = 102 bits (244), Expect = 5e-23
Identities = 44/49 (89%), Positives = 48/49 (97%)
Frame = +1
Query: 109 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 255
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQK 50
Score = 76.2 bits (179), Expect = 4e-15
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = +2
Query: 509 IQAVLSLYESGRTTGIVLDSGDGVSHTVPIYEGYALP 619
IQAVLSLY SGRTTGIVLDSGDGV+HTVPIYEGYALP
Sbjct: 136 IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALP 172
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 98.3 bits (234), Expect = 8e-22
Identities = 40/93 (43%), Positives = 65/93 (69%)
Frame = +3
Query: 231 RDGRYGTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 410
+ G +D VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 411 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVA 509
+LLTE P+NP ANREKM + MFE + +YVA
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVA 135
Score = 54.0 bits (124), Expect = 2e-08
Identities = 23/36 (63%), Positives = 29/36 (80%)
Frame = +2
Query: 509 IQAVLSLYESGRTTGIVLDSGDGVSHTVPIYEGYAL 616
IQAVLSLY G ++G+V+DSGDGV+H VP+YE L
Sbjct: 136 IQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVL 171
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 115 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 219
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 97.1 bits (231), Expect = 2e-21
Identities = 42/90 (46%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Frame = +3
Query: 252 EDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEA 428
+D +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE
Sbjct: 54 KDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEP 113
Query: 429 PLNPKANREKMTQIMFETFNTPAMYVASKP 518
PL N+EK+ + +ET N PA+ + +P
Sbjct: 114 PLANIRNKEKIAEYFYETLNVPALSFSLQP 143
Score = 58.8 bits (136), Expect = 6e-10
Identities = 23/38 (60%), Positives = 34/38 (89%)
Frame = +2
Query: 509 IQAVLSLYESGRTTGIVLDSGDGVSHTVPIYEGYALPT 622
+Q VL+LY S RTTGIVL+ GDG++H+VPIY+G+++P+
Sbjct: 141 LQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPS 178
Score = 56.4 bits (130), Expect = 3e-09
Identities = 24/43 (55%), Positives = 31/43 (72%)
Frame = +1
Query: 127 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 255
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QK
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQK 54
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 93.5 bits (222), Expect = 2e-20
Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 431
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 432 LNPKANREKMTQIMFETFNTPAMYVA 509
LNP NRE +IMFE+FN +Y+A
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIA 158
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +1
Query: 127 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 210
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
Score = 38.7 bits (86), Expect = 7e-04
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +2
Query: 548 TGIVLDSGDGVSHTVPIYEGYAL 616
TG V+DSGDGV+H +P+ EGY +
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVI 202
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 62.9 bits (146), Expect = 4e-11
Identities = 28/73 (38%), Positives = 41/73 (56%)
Frame = +3
Query: 297 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 476
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 477 ETFNTPAMYVASK 515
E+ PA Y+A +
Sbjct: 123 ESLRCPATYLAKQ 135
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 112 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 213
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 61.7 bits (143), Expect = 9e-11
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Frame = +3
Query: 231 RDGRYGTEDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 407
RD + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 408 PVLLTEAPLNPKANREKMTQIMFETFNTPAM 500
P+ +TE NP R MT+++FE +N P++
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSV 147
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 127 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 222
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 28.3 bits (60), Expect = 1.00
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 509 IQAVLSLYESGR--TTGIVLDSGDGVSHTVPIYEG 607
I + S Y + + ++GIVL+ G+ SH +P+ G
Sbjct: 151 IDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNG 185
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 51.6 bits (118), Expect = 9e-08
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Frame = +3
Query: 255 DSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 428
+ YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 50 NKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEP 109
Query: 429 PLNPKANREKMTQIMFETFNTPAMYVASK 515
NP++ R+++ + FE + PA Y+ +
Sbjct: 110 SWNPQSVRQQIMEAAFEQLHVPAFYLTKQ 138
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 112 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 213
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 36.7 bits (81), Expect = 0.003
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +3
Query: 312 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 479
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 480 TFNTPAMYVASKP 518
P +A +P
Sbjct: 172 ECQVPGFTIAYEP 184
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 372 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTP 494
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.43
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 516 PCSRCTSPVVPPVSCWTPATVSPTPCPSTRDTHSPR 623
PC+ + + PPV+C TP P C + H P+
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHPQ 656
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 28.3 bits (60), Expect = 1.00
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = -2
Query: 344 IPVSDDSVFDGVFEGQDTSFALCLVSYVRVFCPIPTITP*WRGLPTIEGNTARGASSPAK 165
+P + +V +TSFAL S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 164 PALHIP 147
P L+ P
Sbjct: 123 PQLNSP 128
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 1.7
Identities = 20/76 (26%), Positives = 27/76 (35%)
Frame = +3
Query: 408 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVASKPCSRCTSPVVPPVSCWTPATVSPT 587
PV T P + + + T + + S S TS +PP T
Sbjct: 300 PVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTV 359
Query: 588 PCPSTRDTHSPRHPAS 635
P ST T +P PAS
Sbjct: 360 PPTSTSSTSTPPPPAS 375
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -2
Query: 242 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 108
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +3
Query: 486 NTPAMYVASKPCSRCTSPVVPPVSCWTPATVSPTPCPSTRDTHSPRHPAS 635
N+ + S C+ TS +PP T P ST T +P PAS
Sbjct: 274 NSSPLPTTSTSCT--TSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPAS 321
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 516 PCSRCTSPVVPPVSCWTPATVSPTPCPST 602
P SR T P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +3
Query: 531 TSPVVPPVSCWTPATVSPTPCPSTRDT 611
TSP S TPA V P P PST T
Sbjct: 833 TSPYATTSSHITPADVHPLPPPSTSTT 859
>SPCC16C4.17 |mug123||meiotically upregulated gene
Mug123|Schizosaccharomyces pombe|chr 3|||Manual
Length = 235
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -3
Query: 274 SSPTYESSVPYRPSRPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPTRQLL 113
SSP+ +SS S G RSR + H + RP + S + P +L
Sbjct: 61 SSPSIKSSSQNGKSSSKGLGGMRSRVFSSQHHGVYHTRPASLHSRTMAPQHTIL 114
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 414 LLTEAPLNPKANREKMTQIMFETFN 488
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 248 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 156
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 486 NTPAMYVASKPCSRCTSPVVPPVSCWTPATVSPTPCP 596
N P Y +S R SP +PP +TP P P P
Sbjct: 207 NEPDDYYSS---GRAVSPEIPPT--YTPKQADPLPAP 238
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/62 (24%), Positives = 24/62 (38%)
Frame = +3
Query: 456 KMTQIMFETFNTPAMYVASKPCSRCTSPVVPPVSCWTPATVSPTPCPSTRDTHSPRHPAS 635
K+ I+ ++ + + P + PP TPA P P R + SP P +
Sbjct: 701 KIDSIIADSMSPMGTGAVNSPAIKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPA 760
Query: 636 GL 641
L
Sbjct: 761 PL 762
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 25.0 bits (52), Expect = 9.3
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -3
Query: 622 RGECVSLVDGHGVGDTVAGVQHDTGGTTGLVQREHGLDATYMAGV 488
+ +C L+ G G G+ AG+ D G T REH L A Y GV
Sbjct: 108 QADCAILIIGGGTGEFEAGISKD--GQT----REHALLA-YTLGV 145
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 549 PVSCWTPATVSPTPCPSTRDTHSPR 623
P S TP + T P+T DTH P+
Sbjct: 280 PQSGSTPQMQNTTSQPTTHDTHPPK 304
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 25.0 bits (52), Expect = 9.3
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -3
Query: 622 RGECVSLVDGHGVGDTVAGVQHDTGGTTGLVQREHGLDATYMAGV 488
+ +C L+ G G G+ AG+ D G T REH L A Y GV
Sbjct: 108 QADCAVLIIGGGTGEFEAGISKD--GQT----REHALLA-YTLGV 145
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 25.0 bits (52), Expect = 9.3
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -3
Query: 622 RGECVSLVDGHGVGDTVAGVQHDTGGTTGLVQREHGLDATYMAGV 488
+ +C L+ G G G+ AG+ D G T REH L A Y GV
Sbjct: 108 QADCAILIIGGGTGEFEAGISKD--GQT----REHALLA-YTLGV 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,573
Number of Sequences: 5004
Number of extensions: 63527
Number of successful extensions: 243
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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