Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1719
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|...    28   1.2  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    28   1.6  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    26   5.0  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   6.6  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    25   8.8  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    25   8.8  

>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 303

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 455 FTL*RSENSETFDGSPFITYKLLPATPSAWSTYFGITLNFT 577
           FT   S + +TF G P + Y L     SAW++    T +FT
Sbjct: 161 FTSDSSISPDTFAGRPVLNYLLAENLISAWNSLETFTKHFT 201


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -3

Query: 308 NSYLTNVHD*LQR*RNNICNKNQARKIIICVITGGRT 198
           +S + N+     R  + +  K+  +K+++C+I+ GRT
Sbjct: 209 HSVMKNISHLCTRKNSQVWGKDAWKKVVVCIISDGRT 245


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 165 GGGTYPSGLTRGPTTSNYANYNFAGLIFITNVIPSPLKSIVNI 293
           G G   SG  R P+  N  N N    I +  ++PSP +  +++
Sbjct: 533 GEGGLLSGALRAPSQQNNNNSNTQHSINLHTIVPSPYEPPLSV 575


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 310 H*KNWYPPAAFEHRCIARYECTGRLIL*ATTTSKTFI 420
           H KN  PP   +H+CI  Y+  G ++  + T   TF+
Sbjct: 295 HLKNGVPP---DHKCIRNYDNAGFVMGTSATLFNTFL 328


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 156 NRQGGGTYPSGLTRGPTTSNYANYNFAG 239
           N      YPS   R P+   Y+NY+  G
Sbjct: 307 NHPHSSNYPSSSRRKPSPDRYSNYSSRG 334


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 103 YNGCPTLQTETHYCFTAEIGKA 168
           Y  CP L +   +CF+A   KA
Sbjct: 517 YPACPLLTSRVRFCFSASHNKA 538


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,245,434
Number of Sequences: 5004
Number of extensions: 68834
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)