Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1719
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1187 + 24667044-24667091,24667196-24667274,24667520-246676...    29   3.0  
01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664           29   4.0  
03_02_0662 - 10250235-10250433,10250692-10253105                       28   6.9  

>07_03_1187 +
           24667044-24667091,24667196-24667274,24667520-24667695,
           24668216-24668766,24669080-24669941
          Length = 571

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 473 ENSETFDGSPFITY-KLLPATPSAWSTYFGITLNFTPHLIY 592
           E+ ++F G+ FIT    LP+ P+  +T    ++N T HL+Y
Sbjct: 95  EHHQSFWGTVFITVGAFLPSAPALCNTESCSSMNGTQHLVY 135


>01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664
          Length = 582

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 81  SSKVSV*LQRLPHPSNRNALLLHGRNRQGGGTYPSGLTRGPTTSNYANYNFAG 239
           S ++ + LQ LP P   +    HG    GGG   +G T+    S  ANY+F G
Sbjct: 388 SQELRLSLQSLPDPMFHHQQHRHG----GGGGGGNGTTQQALFSGAANYSFGG 436


>03_02_0662 - 10250235-10250433,10250692-10253105
          Length = 870

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 681 CIGLTVISIHSYISPLYSPFIE 746
           C+GL  I++   I PL  PFIE
Sbjct: 351 CLGLVAITVQDAIVPLVMPFIE 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,211,169
Number of Sequences: 37544
Number of extensions: 457128
Number of successful extensions: 819
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)