Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1718
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    29   0.74 
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   3.9  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   5.2  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    25   6.9  
SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   6.9  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    25   6.9  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    25   9.1  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   9.1  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    25   9.1  

>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 522 NFTPHLIYVESEIFLNYRMLRKLYKPLF*KILYW 623
           N+ PHLI V + + LN+ M  K + P F  + Y+
Sbjct: 495 NWGPHLIIVPTSVMLNWEMEFKKFLPGFKILTYY 528


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 498  EYLLGITLNFTPHLIYVESEIFLNYRMLRKLYKPLF*KILYWCS 629
            +Y +   L+F   L    S++ LNY ++ +  K L   + YW S
Sbjct: 986  QYNIHCDLSFDNLLPIHNSDLILNYSLIDERVKTLLMLVKYWAS 1029


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 263 H*KNWYPPAAFEHRCIARYECTGRLIL*ATTTSKTFI 373
           H KN  PP   +H+CI  Y+  G ++  + T   TF+
Sbjct: 295 HLKNGVPP---DHKCIRNYDNAGFVMGTSATLFNTFL 328


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 109 NRQGGGTYPSGLTRGPTTSNYANYNFAG 192
           N      YPS   R P+   Y+NY+  G
Sbjct: 307 NHPHSSNYPSSSRRKPSPDRYSNYSSRG 334


>SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 198

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 429 NSETFDGSPFINLQAFARDSVRVEYLLGITL 521
           N       PF     FARD+   +Y+ G+ L
Sbjct: 32  NEHVLKSEPFTKTYYFARDAKNPDYIFGLEL 62


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 56  YNGCPTLQTETHYCFTAEIGKA 121
           Y  CP L +   +CF+A   KA
Sbjct: 517 YPACPLLTSRVRFCFSASHNKA 538


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 241 EHLLRRVSLEKLVPAC 288
           EH LRR  L+ L PAC
Sbjct: 240 EHCLRRSKLDPLFPAC 255


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 529 VKFSVMPSKYSTRTESRAKACRFIKGLPSNVSLFSLLY 416
           VK SV PSK   R E+       I+G  +  S  S+LY
Sbjct: 42  VKGSVSPSKVLRRLENATSKPILIRGASNKESGVSILY 79


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 505 KYSTRTESRAKACRFIKGLPSNVSLFSLLYSVKIIIQNST 386
           K+     +++K  RFI+ LPS        YS +  I+NST
Sbjct: 260 KFIRTYRTKSKTRRFIEDLPSRTISREGFYSEEEEIENST 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,302
Number of Sequences: 5004
Number of extensions: 57150
Number of successful extensions: 96
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)