Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1718
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664           29   3.1  
01_01_0100 - 755894-756662,757086-757598,758718-761050                 28   7.1  

>01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664
          Length = 582

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +1

Query: 34  SSKVSV*LQRLPHPSNRNALLLHGRNRQGGGTYPSGLTRGPTTSNYANYNFAG 192
           S ++ + LQ LP P   +    HG    GGG   +G T+    S  ANY+F G
Sbjct: 388 SQELRLSLQSLPDPMFHHQQHRHG----GGGGGGNGTTQQALFSGAANYSFGG 436


>01_01_0100 - 755894-756662,757086-757598,758718-761050
          Length = 1204

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 535  WGVKFSVMPSKYSTRTESRAKACRFIKG 452
            WG      P+KYS+++E   K CR+  G
Sbjct: 1082 WGAVLKQRPTKYSSKSEE--KVCRYASG 1107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,980,172
Number of Sequences: 37544
Number of extensions: 383872
Number of successful extensions: 706
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)