Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1718
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.5  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -3

Query: 308 CTDVRMPQAGTNFSNETRLNKCSRLTSTVKE*HCVIKIKP 189
           C D+ +P +GT  S+       SR  S ++    +  +KP
Sbjct: 326 CIDMEVPYSGTLISHYEDGETKSRFISGIRSEQTIFDVKP 365


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 423  SENSETFDGSPFINLQAFARDSVRVEYLLGITL 521
            S  +E+F+ S    L+A AR +V+    LG+TL
Sbjct: 937  SRYAESFERSGVTTLEAAARVTVQELTALGVTL 969


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 529 VKFSVMPSKYSTRTESRAKA 470
           V+ S+MP++YST   S   A
Sbjct: 913 VRQSMMPTRYSTTKSSAVTA 932


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,045
Number of Sequences: 438
Number of extensions: 4378
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)