Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1715
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    44   3e-05
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          40   5e-04
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    35   0.014
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    33   0.033
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...    29   0.54 
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   5.1  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    25   8.9  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   8.9  

>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +1

Query: 313 CGLCEEQKSKYCCPKCGILYCSLGCYK 393
           C +C E + KY CPKC   YCSL C+K
Sbjct: 4   CSICNESEIKYKCPKCSFPYCSLPCWK 30


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 286 ITENTFAKICGLCEEQKSKYCCPKCGILYCSLGCYKSDKHL-ECS 417
           ++EN    IC  C++  SKY CP+C   +C L C    K L +CS
Sbjct: 1   MSENRLG-ICSTCQKNASKYRCPRCDSRFCCLECNLEHKRLTKCS 44


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
 Frame = +1

Query: 259 IMDETDTTKITENTFAKICGLCEEQKSK-YCCPKCGIL-YCSLGCYKSD---KHLEC 414
           I    D   +      + C  C E+K K   C  C I+ YCS GC K+D     LEC
Sbjct: 31  IRKRVDILSLDSANLTRTCSTCTEEKVKTQRCAACKIIHYCSKGCQKADWPFHKLEC 87


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 33.5 bits (73), Expect = 0.033
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +1

Query: 307 KICGLCEEQKSKYCCPKCGILYCSLGCYKSDKHLEC 414
           K C +C     KY C  CG  YCS GC        C
Sbjct: 100 KFCNVCGYW-GKYACQNCGTSYCSKGCEVIHSETRC 134


>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 385 CYKSDKHLECSENFYRDWVNEELSSQNVDEESKRKMIEILKKCKM 519
           C+K+   +E  EN YR W ++       D + K  +  +L++C +
Sbjct: 235 CFKTSSIIEMVENNYRTWCSQNERMVEEDFDVKSLIDGVLQQCNL 279


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 388  YKSDKHLECSENFYRDWVNEELSS--QNVDEESKRKMIEILKK 510
            Y SDK   C EN+ R+   EE+++  + +    KR M+ + K+
Sbjct: 982  YASDKRKFCKENYLREKALEEVTNLRKQIIGLLKRYMVRVEKE 1024


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 370 YCSLGCYKSDKHLECSENFYRDWVNEELSSQNV 468
           Y +LG Y+ D   E  +NFY+D  +    +Q V
Sbjct: 500 YDTLGNYQEDDRSEDMQNFYQDSKSNHWEAQIV 532


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 735 STRVPIGGNIEPTSPGLIKASNSFFSSSVRAL 640
           S  VPI G  +P+SP     +N FF SS +++
Sbjct: 398 SNPVPISGQ-QPSSPASNSNANFFFGSSPQSM 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,463
Number of Sequences: 5004
Number of extensions: 54217
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)