Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1715
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0655 - 19621717-19622594,19623186-19623227,19624323-196244... 75 6e-14
01_07_0269 - 42414345-42415328,42415419-42415551,42415939-424160... 36 0.026
10_08_0528 + 18562504-18562568,18563058-18563208,18563296-185633... 31 1.00
07_03_1576 - 27862043-27862129,27862935-27862988,27863042-278632... 31 1.00
04_04_1607 + 34750114-34750193,34750472-34750622,34750730-347507... 30 2.3
04_04_0998 - 29996117-29996242,29996345-29996486,29996613-299968... 30 2.3
05_07_0298 + 29072111-29072169,29072281-29072518,29072660-290727... 29 4.0
11_01_0223 + 1746203-1746228,1746344-1746463,1746942-1747062,174... 29 5.3
02_05_1213 - 34963971-34964658,34965030-34965270,34965347-349657... 29 5.3
09_04_0669 + 19335661-19335917,19336153-19336279,19336393-193367... 28 7.0
>10_08_0655 -
19621717-19622594,19623186-19623227,19624323-19624479,
19625333-19625405,19625483-19625595
Length = 420
Score = 74.9 bits (176), Expect = 6e-14
Identities = 30/67 (44%), Positives = 48/67 (71%)
Frame = +1
Query: 310 ICGLCEEQKSKYCCPKCGILYCSLGCYKSDKHLECSENFYRDWVNEELSSQNVDEESKRK 489
IC +C++Q ++Y CP+C YCSL CYK ++C+E+F R+ V +EL ++ESK+K
Sbjct: 35 ICRVCQKQFAQYTCPRCNARYCSLPCYKGHS-VQCTESFMRENVMDELKQMQPEDESKKK 93
Query: 490 MIEILKK 510
M++ILK+
Sbjct: 94 MLDILKR 100
>01_07_0269 -
42414345-42415328,42415419-42415551,42415939-42416007,
42416459-42416672,42416785-42417040
Length = 551
Score = 36.3 bits (80), Expect = 0.026
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +1
Query: 313 CGLCEEQKSKYCCPKCGILYCSLGCYKSDK 402
C C EQ KY CP C L CSL C +S K
Sbjct: 29 CEECGEQPWKYRCPGCSRLTCSLPCVQSHK 58
>10_08_0528 +
18562504-18562568,18563058-18563208,18563296-18563362,
18563470-18563704,18564655-18564865
Length = 242
Score = 31.1 bits (67), Expect = 1.00
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = +1
Query: 244 QYHSRIMDETDTTKITENTFAKICGLCEEQKSKYCCPKCGILYCSLGCYKSDKHLECSEN 423
+Y R DE + + + CG+C E SK P C C L CY+ S
Sbjct: 123 RYRRRDEDERNILSEIDAEREEECGICMEMNSKVVLPNCTHNMC-LRCYQDWNSRSQSCP 181
Query: 424 FYRD 435
F RD
Sbjct: 182 FCRD 185
>07_03_1576 -
27862043-27862129,27862935-27862988,27863042-27863243,
27865015-27865249,27865338-27865404,27865489-27865639,
27866898-27866957,27867402-27867466
Length = 306
Score = 31.1 bits (67), Expect = 1.00
Identities = 22/93 (23%), Positives = 36/93 (38%)
Frame = +1
Query: 244 QYHSRIMDETDTTKITENTFAKICGLCEEQKSKYCCPKCGILYCSLGCYKSDKHLECSEN 423
+Y R D+ ++ + CG+C E K P C C + CY+ + S
Sbjct: 143 RYRRRDEDQKMVISEIDDNIEEECGICMEINGKVVLPTCSHAMC-IKCYRDWRSRSQSCP 201
Query: 424 FYRDWVNEELSSQNVDEESKRKMIEILKKCKMN 522
F RD + S+ R +++I K N
Sbjct: 202 FCRDSLKRVNSADLWIYTDNRDIVDIATVRKEN 234
>04_04_1607 +
34750114-34750193,34750472-34750622,34750730-34750796,
34750905-34751142,34751903-34752113
Length = 248
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 313 CGLCEEQKSKYCCPKCGILYCSLGCYKSDKHLECSENFYRD 435
CG+C E +K P C C + CY+ + S F RD
Sbjct: 152 CGICMEMNNKVVLPNCSHAMC-MKCYRQWRSRSQSCPFCRD 191
>04_04_0998 -
29996117-29996242,29996345-29996486,29996613-29996812,
29997112-29997497,29997769-29998318,29998949-29999296
Length = 583
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +1
Query: 310 ICGLCEEQKSKYCCPKCGILYCSL---GCYKSDKHLECSENFYRDWVNEELSSQNVDEE 477
+ G E++ + CPKC +CS C+ + L E R + +S + V +E
Sbjct: 383 VIGCLEDEDNNAQCPKCSFFFCSFCKEPCHPRRQCLTPEEKLQRRQASGRMSEREVAQE 441
>05_07_0298 +
29072111-29072169,29072281-29072518,29072660-29072740,
29072831-29072897,29073055-29073191,29073319-29073321
Length = 194
Score = 29.1 bits (62), Expect = 4.0
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Frame = +1
Query: 268 ETDTTKITE--NTFAKICGLCEEQKSKYC-C--PKCGILYC-----SLGCYKSDKHLECS 417
++ T+ I++ NT + G + + +K C C KC LYC S+GC K LECS
Sbjct: 82 QSSTSAISDPKNTSDAMPGNEQRKHAKGCSCRKSKCSKLYCECFKNSVGCTAKCKCLECS 141
Query: 418 ENFYRDWVNEELSSQNVDEESK 483
+F V SS D + K
Sbjct: 142 NSF---GVKNSESSNKPDPDDK 160
>11_01_0223 +
1746203-1746228,1746344-1746463,1746942-1747062,
1747441-1747572,1748266-1748375,1748465-1748648,
1749153-1749305,1749672-1749818
Length = 330
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 343 YCCPKCGILYCSLGCYKSDKHLECSENFYRDWVNEELS 456
Y CP C Y SL H++ NF+ NEELS
Sbjct: 162 YVCPNCERRYSSLNALDLVSHID--NNFHCKHCNEELS 197
>02_05_1213 -
34963971-34964658,34965030-34965270,34965347-34965736,
34966515-34966781,34966881-34967249,34967931-34968014,
34968113-34968226,34969952-34970018
Length = 739
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 433 HDRNFLNTLNVCLIYNNRANNIIYHILGNNTCFSVLH 323
H RN + + +C+ +N R ++Y ++ N + S LH
Sbjct: 396 HHRNLVKLIGICIEHNKRC--LVYELIRNGSVESHLH 430
>09_04_0669 +
19335661-19335917,19336153-19336279,19336393-19336771,
19336857-19336915,19337413-19337449,19337629-19337996,
19338493-19338543
Length = 425
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 244 QYHSRIMDETDTTKITENTFAKICGLCEEQKSKYCCPKCGILYCSLGCYKSDKHLECSEN 423
Q H MD+ D+ +I+E+ AK CE ++ G++ SLG K ++ S++
Sbjct: 107 QKHGGGMDQVDSFRISEDELAKWEKCCESSSTEQETSTEGLIGPSLGPLKDIRNKSTSKH 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,694,238
Number of Sequences: 37544
Number of extensions: 296306
Number of successful extensions: 782
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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