Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1715
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021180-2|CAA15981.2|  188|Caenorhabditis elegans Hypothetical ...    73   2e-13
Z70783-9|CAA94857.2|  455|Caenorhabditis elegans Hypothetical pr...    38   0.006
AF016445-10|AAC69056.2|  178|Caenorhabditis elegans Hypothetical...    31   0.89 
AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z81054-4|CAB02885.3|  321|Caenorhabditis elegans Hypothetical pr...    29   2.7  
L02877-1|AAA50614.1|  321|Caenorhabditis elegans homeoprotein pr...    29   2.7  
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    29   2.7  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    29   2.7  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      29   2.7  
Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z81054-5|CAE17755.1|  313|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z66497-6|CAA91288.1|  312|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z66497-5|CAA91287.1|  340|Caenorhabditis elegans Hypothetical pr...    28   8.3  
U53335-5|AAY86255.1|  233|Caenorhabditis elegans Hypothetical pr...    28   8.3  
M20244-1|AAA28108.1|  313|Caenorhabditis elegans protein ( C.ele...    28   8.3  

>AL021180-2|CAA15981.2|  188|Caenorhabditis elegans Hypothetical
           protein F43C1.3 protein.
          Length = 188

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 6/70 (8%)
 Frame = +1

Query: 313 CGLCE-EQKSKYCCPKCGILYCSLGCYKSDKHLECSENFYRDWVNEELSSQNVD-----E 474
           CG+C  E++  Y CP+C +LYC++ CY++ KH ECSE FY++ V +ELS +  D     E
Sbjct: 9   CGICGVEKREPYKCPRCDLLYCTIKCYRNPKHSECSEKFYQEQVKQELSGKKADISQKGE 68

Query: 475 ESKRKMIEIL 504
           E K KM + L
Sbjct: 69  EYKEKMQKFL 78


>Z70783-9|CAA94857.2|  455|Caenorhabditis elegans Hypothetical
           protein ZK856.9 protein.
          Length = 455

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 307 KICGLCEEQKSKYCCPKCGILYCSLGCYKSDK 402
           K+C +C + + KY CP+C +  CSL C K  K
Sbjct: 82  KLCKVCLKNEHKYKCPRCEMRTCSLDCSKKHK 113


>AF016445-10|AAC69056.2|  178|Caenorhabditis elegans Hypothetical
           protein T05B4.4 protein.
          Length = 178

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +1

Query: 298 TFAKICGLCEEQKSKYCCPKCGILYCSLGCYKSDK 402
           T AK CGLC  Q   Y C KC  +     C KS K
Sbjct: 145 TCAKTCGLCC-QTDAYSCSKCLKILRKFNCIKSKK 178


>AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical
           protein Y48G1A.3 protein.
          Length = 388

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 307 KICGLCEEQKSKYCCPKCGILYCSLGCYKSD 399
           + C +C    +K  C +C + YCS  C K D
Sbjct: 319 QFCSVCGHPGAKKRCTQCKLAYCSQECQKFD 349


>Z81054-4|CAB02885.3|  321|Caenorhabditis elegans Hypothetical
           protein F01D4.6a protein.
          Length = 321

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +1

Query: 244 QYHSRIMDETDTTKITENTFAKICGLCEEQKSKYCCPKCGILYCSLGCYKSDKHLECS 417
           Q + R +   D     EN     C +CE   ++ C  K G +YCS   YK      C+
Sbjct: 35  QIYDRYIYRMDNRSYHENCVK--CTICESPLAEKCFWKNGRIYCSQHYYKDHSIHRCA 90


>L02877-1|AAA50614.1|  321|Caenorhabditis elegans homeoprotein
           protein.
          Length = 321

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +1

Query: 244 QYHSRIMDETDTTKITENTFAKICGLCEEQKSKYCCPKCGILYCSLGCYKSDKHLECS 417
           Q + R +   D     EN     C +CE   ++ C  K G +YCS   YK      C+
Sbjct: 35  QIYDRYIYRMDNRSYHENCVK--CTICESPLAEKCFWKNGRIYCSQHYYKDHSIHRCA 90


>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 304 AKICGLCEEQKSKYCCPKCGILYCSLGCYKSDKHLECSENFY 429
           +K C  C  + +  C P  G   C  G Y  +  L CS++ Y
Sbjct: 381 SKTC-TCVRENTLMCAPNTGFCRCKPGFYGDNCELACSKDSY 421


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 304 AKICGLCEEQKSKYCCPKCGILYCSLGCYKSDKHLECSENFY 429
           +K C  C  + +  C P  G   C  G Y  +  L CS++ Y
Sbjct: 381 SKTC-TCVRENTLMCAPNTGFCRCKPGFYGDNCELACSKDSY 421


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 304 AKICGLCEEQKSKYCCPKCGILYCSLGCYKSDKHLECSENFY 429
           +K C  C  + +  C P  G   C  G Y  +  L CS++ Y
Sbjct: 381 SKTC-TCVRENTLMCAPNTGFCRCKPGFYGDNCELACSKDSY 421


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 304 AKICGLCEEQKSKYCCPKCGILYCSLGCYKSDKHLECSENFY 429
           +K C  C  + +  C P  G   C  G Y  +  L CS++ Y
Sbjct: 381 SKTC-TCVRENTLMCAPNTGFCRCKPGFYGDNCELACSKDSY 421


>Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical
           protein C44B9.4 protein.
          Length = 1150

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 304 AKICGLCEEQKSKYCCPKCGILYCSLGCYKSDKHLECSENFY 429
           A+ICG+C    +  CC +C   +  L C   +      +NFY
Sbjct: 59  AQICGICSSGGNILCCEQCPASF-HLACIGYESSDLPDDNFY 99


>Z81054-5|CAE17755.1|  313|Caenorhabditis elegans Hypothetical
           protein F01D4.6b protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 313 CGLCEEQKSKYCCPKCGILYCSLGCYKSDKHLECS 417
           C +CE   ++ C  K G +YCS   YK      C+
Sbjct: 48  CTICESPLAEKCFWKNGRIYCSQHYYKDHSIHRCA 82


>Z66497-6|CAA91288.1|  312|Caenorhabditis elegans Hypothetical
           protein K08F8.5b protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +1

Query: 403 HLECSENFYRDWVNEELSSQNVDEESKRKMI 495
           H+E S++F+ DWVN +  +Q++  E K +M+
Sbjct: 38  HIEKSKSFHYDWVNFK-KAQSLTIEGKYEMV 67


>Z66497-5|CAA91287.1|  340|Caenorhabditis elegans Hypothetical
           protein K08F8.5a protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +1

Query: 403 HLECSENFYRDWVNEELSSQNVDEESKRKMI 495
           H+E S++F+ DWVN +  +Q++  E K +M+
Sbjct: 66  HIEKSKSFHYDWVNFK-KAQSLTIEGKYEMV 95


>U53335-5|AAY86255.1|  233|Caenorhabditis elegans Hypothetical
           protein C55C3.8 protein.
          Length = 233

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 430 DRNFLNTLNVCLIYNNRANNIIYHILGNNTCF 335
           + N + +LN+ L   NR+N +I+ I GN+  F
Sbjct: 171 EHNDIKSLNILLRVVNRSNKLIFTINGNDYTF 202


>M20244-1|AAA28108.1|  313|Caenorhabditis elegans protein (
           C.elegans mec-3 geneencoding differentiation of the six
           touch receptor neurons,complete cds. ).
          Length = 313

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 313 CGLCEEQKSKYCCPKCGILYCSLGCYKSDKHLECS 417
           C +CE   ++ C  K G +YCS   YK      C+
Sbjct: 48  CTICESPLAEKCFWKNGRIYCSQHYYKDHSIHRCA 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,536,821
Number of Sequences: 27780
Number of extensions: 303960
Number of successful extensions: 920
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)