Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1714
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1169 - 35082160-35082292,35082572-35082651,35082727-350829...    31   1.1  

>01_06_1169 -
           35082160-35082292,35082572-35082651,35082727-35082939,
           35083243-35083323,35083381-35083492,35083697-35083786,
           35083986-35084176,35084683-35084762,35085266-35085347,
           35085506-35085590,35086261-35086379
          Length = 421

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -2

Query: 208 CMYRIYIHMHV---VKS--GYYNITNRHCNFIYMHR*SVVNFLTRNQTW 77
           C+ + Y H+HV   ++S  G  N   R C  + +H  S VN LTRN  W
Sbjct: 362 CLEQSYRHLHVDVDLRSVIGLSNTAFRKCLLLGIHNDSDVNELTRNLGW 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,251,441
Number of Sequences: 37544
Number of extensions: 343254
Number of successful extensions: 599
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)