Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1714
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64841-2|AAB04846.2|  337|Caenorhabditis elegans Serpentine rece...    28   6.8  
U56081-1|AAB37243.1|  346|Caenorhabditis elegans T-BOX 12 protein.     28   6.8  
AJ252168-1|CAB65731.1|  346|Caenorhabditis elegans T-box DNA bin...    28   6.8  
AF025468-3|AAF02176.1|  346|Caenorhabditis elegans Male abnormal...    28   6.8  
AC024783-3|AAL32245.1|  273|Caenorhabditis elegans Hypothetical ...    28   8.9  

>U64841-2|AAB04846.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein14 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/45 (24%), Positives = 27/45 (60%)
 Frame = +1

Query: 658 FELSLGS*VNV*FDVKKSGFSRLAITLVGSRLYRLLCHEAVMRFG 792
           F+ ++G   N+ +++ ++  + L + L+ + LY  LC+  + +FG
Sbjct: 164 FDPNIGKEANLYYNIPQT-INNLLVALLSTALYIYLCYHLIFKFG 207


>U56081-1|AAB37243.1|  346|Caenorhabditis elegans T-BOX 12 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 134 IAVSVCNIVITAFYYMHMNIYTVHTPKY-FFYN 229
           + VS  N+++ A YY+ +++  V + +Y + YN
Sbjct: 110 VKVSFTNVILDALYYIFLDVVPVDSKRYRYIYN 142


>AJ252168-1|CAB65731.1|  346|Caenorhabditis elegans T-box DNA
           binding protein protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 134 IAVSVCNIVITAFYYMHMNIYTVHTPKY-FFYN 229
           + VS  N+++ A YY+ +++  V + +Y + YN
Sbjct: 110 VKVSFTNVILDALYYIFLDVVPVDSKRYRYIYN 142


>AF025468-3|AAF02176.1|  346|Caenorhabditis elegans Male abnormal
           protein 9 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 134 IAVSVCNIVITAFYYMHMNIYTVHTPKY-FFYN 229
           + VS  N+++ A YY+ +++  V + +Y + YN
Sbjct: 110 VKVSFTNVILDALYYIFLDVVPVDSKRYRYIYN 142


>AC024783-3|AAL32245.1|  273|Caenorhabditis elegans Hypothetical
           protein Y45G5AL.1a protein.
          Length = 273

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 618 QRHPIRHSYFVSPNYHYNNDA 556
           Q +P++H  FV+P + YN DA
Sbjct: 51  QHNPLQHQGFVNPVHEYNYDA 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,081,838
Number of Sequences: 27780
Number of extensions: 358350
Number of successful extensions: 839
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)