Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1714
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   4.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   7.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 694 TKH*LMNQAIIQTQIIKSHSI 632
           T H + NQ ++QT ++  H+I
Sbjct: 381 TCHAVRNQDVVQTHVLTIHTI 401


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = -1

Query: 215 ILVYVPYIYSYACSKKRLLQYYKQTLQFYLYA*IICREFPYSKPDVA 75
           + V+ P  Y        L Q Y+Q+L  Y Y  +I         DV+
Sbjct: 427 VAVHDPVFYQLYKKVMNLYQQYQQSLPVYQYNDLILPGVTIQNVDVS 473


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 179 MHMNIYTVHTPKYFFYNF*SLER 247
           +  ++  +H  KYF Y+F S ER
Sbjct: 28  LEKSLNVIHEWKYFDYDFGSEER 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,343
Number of Sequences: 438
Number of extensions: 4891
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)