Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1713
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1252 - 35748000-35748173,35748243-35748375,35749771-357498... 32 0.44
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 29 3.1
05_05_0036 - 21758409-21758531,21758891-21759206,21759964-217611... 29 4.1
07_03_1177 - 24574682-24574852,24575047-24575618,24575711-245760... 28 5.4
04_04_0326 - 24407201-24407374,24407397-24407460,24408266-244086... 28 7.1
08_01_0812 + 7886057-7886872,7887115-7887702 27 9.4
02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790 27 9.4
02_01_0292 + 1949926-1950037,1950121-1950250,1950551-1950616,195... 27 9.4
01_06_1767 + 39766350-39766508,39766602-39766654,39766763-397668... 27 9.4
>01_06_1252 -
35748000-35748173,35748243-35748375,35749771-35749847,
35750465-35750509,35750584-35750679,35751125-35751130,
35751259-35751388,35751510-35751706
Length = 285
Score = 31.9 bits (69), Expect = 0.44
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = -3
Query: 277 DPARVSIERWLPTTAGTK-SSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLT 101
DP ++ + ++ +K SS G+ + +D I SG G A G GY+
Sbjct: 98 DPLKIYLHKYREMEGDSKLSSKAGDGSVKKDT-IGPHSGASSSSAQGMVGAYTQGMGYMQ 156
Query: 100 PQSN-QVLLFFRTYA 59
PQSN +L+ +++A
Sbjct: 157 PQSNFHILVVLQSFA 171
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 259 WRPSPDPGQVRSCPRCPSLHTG 324
WR SP ++ CP C HTG
Sbjct: 414 WRESPASRAMQKCPACKRTHTG 435
>05_05_0036 -
21758409-21758531,21758891-21759206,21759964-21761121,
21761236-21761333
Length = 564
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 149 VRWPWICHDGWPRLFDASI*SSASLLPHVRSE 54
VR+ W+C+D RL D S+ S S ++ E
Sbjct: 416 VRFEWVCYDSAKRLLDKSLYSVLSDFAQIQDE 447
>07_03_1177 -
24574682-24574852,24575047-24575618,24575711-24576068,
24576108-24576152
Length = 381
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Frame = -3
Query: 298 DSSEPGQDPARV-SIERWLPTTAGTKSSLTGNSTEPRDKLISSQS--GPQEYRFDGRGYA 128
D S G + +R+ + + ++ T AG S + G E ++ + ++ +F+ + A
Sbjct: 155 DRSYNGGESSRIITFDEFIDTAAGAASRVVGIYPEIKNPVFVNRQVRWRDGKKFEDKFVA 214
Query: 127 TMAGRGY----LTPQSNQVLLFFRTYAPNGLIY 41
+ RGY ++P +F +++AP L+Y
Sbjct: 215 ALKRRGYGGRYMSPAWAARPVFIQSFAPTSLVY 247
>04_04_0326 -
24407201-24407374,24407397-24407460,24408266-24408689,
24408885-24409057,24409178-24409275,24409723-24409853,
24410053-24410174,24411091-24411245,24411976-24412081,
24412328-24412419,24412499-24412620,24413444-24413544,
24413636-24413849,24414173-24414311,24415228-24415584
Length = 823
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -2
Query: 176 LAVWPSRVQVRWPWICHDGWPRLFDASI*SSASLLPHVRSERLDI 42
LAV PS PW CH R+ +A +S P R E +
Sbjct: 731 LAVTPSMFTDHLPWRCHYAMQRVLEAQTAASCPDSPESRIELFSV 775
>08_01_0812 + 7886057-7886872,7887115-7887702
Length = 467
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = -2
Query: 281 PGSGEGLH*KMVADNRWYQVIVDR*LHRTQG*IDLLAVWPSRVQVRWPWICHDGWPRLFD 102
P + GLH +MV DN +I R R + LL W S++ V W + H G L
Sbjct: 78 PAASSGLH-QMVRDNYTQGLI--RAFGRRRHDEALLHKWFSQLDVEWVLLLHAGQRDLDS 134
Query: 101 ASI 93
+S+
Sbjct: 135 SSV 137
>02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790
Length = 192
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -2
Query: 125 DGWPRL-FDASI*SSASLLPHVRSERLDIP 39
DG R+ FDAS S +L+P +RS R ++P
Sbjct: 131 DGLRRINFDASTNSMVALVPRLRSSRPELP 160
>02_01_0292 +
1949926-1950037,1950121-1950250,1950551-1950616,
1950718-1950789,1951198-1951607,1951789-1951994,
1952121-1952407,1952527-1952665,1952746-1953141
Length = 605
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 162 GPDCEEINLSLGSVELPVNDDLVPAVVGNHLSMETLAGSWPGSELSPMSITT 317
GP+ ++LS + + + L PAV +LS +L+G P S S++T
Sbjct: 75 GPNITAMDLSSNRIGGVIPESLPPAVKQLNLSSNSLSGKLPDSMAKLNSLST 126
>01_06_1767 +
39766350-39766508,39766602-39766654,39766763-39766829,
39766929-39766984,39767287-39767791,39767981-39768069,
39768678-39768768,39769052-39769177,39769256-39769513,
39769748-39770029
Length = 561
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 613 PKSVCLKIIIFLHY*QHNNDLYHITAYNKL 524
P C K LHY + N+ LYH T Y+ L
Sbjct: 530 PCYFCDKCYYLLHYKEDNSLLYHHTVYDYL 559
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,544,929
Number of Sequences: 37544
Number of extensions: 431766
Number of successful extensions: 1311
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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