Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1713
(636 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P... 32 0.57
M96388-1|AAA28662.1| 3712|Drosophila melanogaster laminin A chai... 31 0.99
M75882-1|AAA28661.1| 1951|Drosophila melanogaster laminin A chai... 31 0.99
L07288-1|AAC37178.1| 3712|Drosophila melanogaster laminin A prot... 31 0.99
AE014296-1101|AAF50672.2| 3712|Drosophila melanogaster CG10236-P... 31 0.99
BT025811-1|ABF85711.1| 237|Drosophila melanogaster IP01956p pro... 29 5.3
AE013599-112|AAF57306.1| 237|Drosophila melanogaster CG14468-PA... 29 5.3
AE013599-128|AAM68338.1| 1209|Drosophila melanogaster CG14471-PB... 28 9.2
>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
protein.
Length = 23015
Score = 32.3 bits (70), Expect = 0.57
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Frame = +1
Query: 253 FQWRPSPDPGQVR------SCPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCECV 414
F+ P+P+ G VR + +CPS H I ++C PC++ C + E +C + V
Sbjct: 2114 FEGNPTPEQGCVRVPAPCLASNQCPSGHMCIGNQCNLPCTKTAS--CAVGE---RCYQQV 2168
Query: 415 TCVSVCFYDVRVLRSE 462
C VC+ L E
Sbjct: 2169 -CRKVCYTSNNCLAGE 2183
Score = 28.7 bits (61), Expect = 7.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 274 DPGQVRSCPRCPSLHTGIRSECRSPCSR 357
DP + S CP+ + S CRSPC R
Sbjct: 2434 DPNECLSDADCPASASCQNSRCRSPCER 2461
>M96388-1|AAA28662.1| 3712|Drosophila melanogaster laminin A chain
protein.
Length = 3712
Score = 31.5 bits (68), Expect = 0.99
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = -3
Query: 358 DDYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIERWLPTTA---GTKSSLTGNSTEPRD 188
+D++ + I NGYP + +D+G+ E V+ RW G + LT P
Sbjct: 2727 NDFVAVEIVNGYPILTIDLGNGPERITSDKYVADGRWYQAVVDRMGPNAKLTIREELPNG 2786
Query: 187 KLIS-SQSG 164
++ S+SG
Sbjct: 2787 DVVEHSKSG 2795
>M75882-1|AAA28661.1| 1951|Drosophila melanogaster laminin A chain
protein.
Length = 1951
Score = 31.5 bits (68), Expect = 0.99
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = -3
Query: 358 DDYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIERWLPTTA---GTKSSLTGNSTEPRD 188
+D++ + I NGYP + +D+G+ E V+ RW G + LT P
Sbjct: 966 NDFVAVEIVNGYPILTIDLGNGPERITSDKYVADGRWYQAVVDRMGPNAKLTIREELPNG 1025
Query: 187 KLIS-SQSG 164
++ S+SG
Sbjct: 1026 DVVEHSKSG 1034
>L07288-1|AAC37178.1| 3712|Drosophila melanogaster laminin A protein.
Length = 3712
Score = 31.5 bits (68), Expect = 0.99
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = -3
Query: 358 DDYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIERWLPTTA---GTKSSLTGNSTEPRD 188
+D++ + I NGYP + +D+G+ E V+ RW G + LT P
Sbjct: 2727 NDFVAVEIVNGYPILTIDLGNGPERITSDKYVADGRWYQAVVDRMGPNAKLTIREELPNG 2786
Query: 187 KLIS-SQSG 164
++ S+SG
Sbjct: 2787 DVVEHSKSG 2795
>AE014296-1101|AAF50672.2| 3712|Drosophila melanogaster CG10236-PA
protein.
Length = 3712
Score = 31.5 bits (68), Expect = 0.99
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = -3
Query: 358 DDYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIERWLPTTA---GTKSSLTGNSTEPRD 188
+D++ + I NGYP + +D+G+ E V+ RW G + LT P
Sbjct: 2727 NDFVAVEIVNGYPILTIDLGNGPERITSDKYVADGRWYQAVVDRMGPNAKLTIREELPNG 2786
Query: 187 KLIS-SQSG 164
++ S+SG
Sbjct: 2787 DVVEHSKSG 2795
>BT025811-1|ABF85711.1| 237|Drosophila melanogaster IP01956p
protein.
Length = 237
Score = 29.1 bits (62), Expect = 5.3
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 67 CGRREALD*IEASNNLGQPSWHIHGHRTCTLEGQTARRSIYPWVL 201
CGR +D AS+N P G + CT G TA+ S Y W +
Sbjct: 143 CGRSSVVDYQTASSNRTWPIGSCCGKQNCT--GCTAKLSQYLWTI 185
>AE013599-112|AAF57306.1| 237|Drosophila melanogaster CG14468-PA
protein.
Length = 237
Score = 29.1 bits (62), Expect = 5.3
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 67 CGRREALD*IEASNNLGQPSWHIHGHRTCTLEGQTARRSIYPWVL 201
CGR +D AS+N P G + CT G TA+ S Y W +
Sbjct: 143 CGRSSVVDYQTASSNRTWPIGSCCGKQNCT--GCTAKLSQYLWTI 185
>AE013599-128|AAM68338.1| 1209|Drosophila melanogaster CG14471-PB,
isoform B protein.
Length = 1209
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 310 MDIGDSSEPGQDPARVSIERWLPTTAGTKSSLTGNSTEPRDK 185
MD GD + G+ A ++ TTA K+ ++ ++TE K
Sbjct: 619 MDTGDGNSDGEKGAAAEVDLTTETTATAKTLVSSSTTEAMRK 660
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,300,004
Number of Sequences: 53049
Number of extensions: 752952
Number of successful extensions: 2643
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2621
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -