Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1713
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81038-3|CAB02759.1|  316|Caenorhabditis elegans Hypothetical pr...    33   0.23 
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81581-4|CAB04663.2|  568|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    28   4.9  
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.    28   4.9  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    28   4.9  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    28   4.9  
Z92825-4|CAB07312.1|  467|Caenorhabditis elegans Hypothetical pr...    28   6.4  
L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore co...    28   6.4  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    27   8.5  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    27   8.5  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    27   8.5  

>Z81038-3|CAB02759.1|  316|Caenorhabditis elegans Hypothetical
           protein C25A1.5 protein.
          Length = 316

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +1

Query: 181 SIYPWVLWSYLSTMTWY---QRLSATIFQWRPSPD-PGQV 288
           SI  W  W  +  +TW      L   +F W+PSPD P Q+
Sbjct: 160 SILLWSAWFVIGVLTWTLTEYSLHRWVFHWKPSPDSPNQI 199


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 316  HTGIRSECRSPCSRPKKR*CEILEIVLKCCECVTCVSVCFYDVRVLRSECE 468
            H+G   +    C+ P +R CE +E      + V+C+SV  Y+   L S CE
Sbjct: 1653 HSGFEGDGIKKCTNPLERSCEDVEKFCGRVDHVSCLSVRIYN-GSLSSVCE 1702


>Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical
           protein K08F8.2 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +1

Query: 238 LSATIFQWRPSPDPGQVR----SCPRCPSLHTGIRSECRSPCS 354
           LSA + Q RPSP   Q R    S    P  HTG +S+C S  S
Sbjct: 267 LSALLSQRRPSPTVPQSRTEHISGLNSPPRHTGNKSDCESVSS 309


>Z81581-4|CAB04663.2|  568|Caenorhabditis elegans Hypothetical
           protein T02E1.2 protein.
          Length = 568

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 428 TLTH-VTHS-QHFNTISNISHYRFLGRLHGDRHSERIPV 318
           TL H  T+S QHF+   ++  Y+F G L  D  +E +P+
Sbjct: 342 TLAHFATYSFQHFDEFVHVVPYKFSGTLDRDLRNEIMPI 380


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
 Frame = +1

Query: 190 PWVLWSYLSTMTWYQRLSATIFQWRPSPDPGQVRSCPRCPSL-HTGIRSEC----RSPCS 354
           P  + + + T +   +   T  Q  P+P P Q +    CP L      S+C    + PC 
Sbjct: 485 PKCIIATIKTPSQQPQFVVTTTQAPPAPAPQQQQQLASCPQLCQPQCTSQCVQQQQCPCQ 544

Query: 355 RPKKR*CEILEIVLKCCECVTCVSVC 432
           +  +  C+      + C+ V CV VC
Sbjct: 545 QTCQTGCQQHNPDARVCQNV-CVEVC 569


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/64 (21%), Positives = 31/64 (48%)
 Frame = -3

Query: 226  KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 47
            K +   N  + + K I+  +       DG GY +     +   ++ ++ L F T++P+GL
Sbjct: 2876 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 2934

Query: 46   IYLL 35
            ++ +
Sbjct: 2935 LFFV 2938


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/64 (21%), Positives = 31/64 (48%)
 Frame = -3

Query: 226  KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 47
            K +   N  + + K I+  +       DG GY +     +   ++ ++ L F T++P+GL
Sbjct: 2876 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 2934

Query: 46   IYLL 35
            ++ +
Sbjct: 2935 LFFV 2938


>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
          Length = 1518

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/64 (21%), Positives = 31/64 (48%)
 Frame = -3

Query: 226 KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 47
           K +   N  + + K I+  +       DG GY +     +   ++ ++ L F T++P+GL
Sbjct: 690 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 748

Query: 46  IYLL 35
           ++ +
Sbjct: 749 LFFV 752


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/64 (21%), Positives = 31/64 (48%)
 Frame = -3

Query: 226  KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 47
            K +   N  + + K I+  +       DG GY +     +   ++ ++ L F T++P+GL
Sbjct: 2876 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 2934

Query: 46   IYLL 35
            ++ +
Sbjct: 2935 LFFV 2938


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/64 (21%), Positives = 31/64 (48%)
 Frame = -3

Query: 226  KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 47
            K +   N  + + K I+  +       DG GY +     +   ++ ++ L F T++P+GL
Sbjct: 2876 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 2934

Query: 46   IYLL 35
            ++ +
Sbjct: 2935 LFFV 2938


>Z92825-4|CAB07312.1|  467|Caenorhabditis elegans Hypothetical
           protein C13C4.6 protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 464 VSLCVI*CRLYLVRVS*VRYKFIVCCNMVQIIV 562
           V++CV+  RLYL++     Y  ++ C ++ II+
Sbjct: 320 VAVCVLVLRLYLIKTYTGWYDSVIVCTLLSIIM 352


>L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore
           complex protein protein15 protein.
          Length = 1127

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
 Frame = +1

Query: 124 SWHIHGHRTCTLEGQTARRSIYPWVLWSYLSTMTWYQRLS---ATIFQWRPSPDPGQVRS 294
           +WH   HR+       +    Y WVL S      W +  S   A I    P P  G  RS
Sbjct: 29  NWHASAHRSEVTSNCASLNDRYCWVL-SRNQIFIWERAKSSHRAIIPTQLPLPTSGLPRS 87

Query: 295 CPRCPSLHTGI-RSECRSPC 351
             +C  ++ G+ R   ++PC
Sbjct: 88  V-KCVVVYDGVHRGANKTPC 106


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoformb protein.
          Length = 1437

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 263  DPRRILARFGAVPDVHHYIRVSVLNAD--HHVVVLKNGSVKY*KLC 394
            DPRR  ARF A+ D HH I  S +NAD     V L   ++K  + C
Sbjct: 1068 DPRR--ARF-ALTDFHHCIESSRVNADEIRKTVQLTENNIKKLENC 1110


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoforma protein.
          Length = 1435

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 263  DPRRILARFGAVPDVHHYIRVSVLNAD--HHVVVLKNGSVKY*KLC 394
            DPRR  ARF A+ D HH I  S +NAD     V L   ++K  + C
Sbjct: 1068 DPRR--ARF-ALTDFHHCIESSRVNADEIRKTVQLTENNIKKLENC 1110


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 263 DPRRILARFGAVPDVHHYIRVSVLNAD--HHVVVLKNGSVKY*KLC 394
           DPRR  ARF A+ D HH I  S +NAD     V L   ++K  + C
Sbjct: 651 DPRR--ARF-ALTDFHHCIESSRVNADEIRKTVQLTENNIKKLENC 693


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,767,909
Number of Sequences: 27780
Number of extensions: 372947
Number of successful extensions: 1029
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)