Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1713
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   5.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.6  

>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +3

Query: 171 CEEINLSLGSVELPVNDDLVPAVVGNHLSMETLAGSW 281
           CE++ +SLG++++ +    +P     HL  +  +  W
Sbjct: 22  CEKVYVSLGALKMHIRTHTLPCKC--HLCGKAFSRPW 56


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +3

Query: 180 INLSLGSVELPVNDD----LVPAVVGNHLSMETLAGSWPGSELSPMSITTYGYP 329
           +NL  GS  +  N      +VP  V + +    L  S  GSE    S   YG+P
Sbjct: 546 VNLKSGSNTIERNSHESVFVVPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGFP 599


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +3

Query: 180 INLSLGSVELPVNDD----LVPAVVGNHLSMETLAGSWPGSELSPMSITTYGYP 329
           +NL  GS  +  N      +VP  V + +    L  S  GSE    S   YG+P
Sbjct: 546 VNLKSGSNTIERNSHESVFVVPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGFP 599


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 302 RGQLRTWPGSGEG 264
           RGQLRT   SGEG
Sbjct: 396 RGQLRTKIESGEG 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,595
Number of Sequences: 438
Number of extensions: 4808
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)