Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1712X
(375 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 26 1.7
SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha... 26 1.7
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 26 1.7
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 26 2.2
SPAC222.08c |||imidazoleglycerol-phosphate synthase |Schizosacch... 25 5.1
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 5.1
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||... 24 6.8
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po... 24 9.0
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar... 24 9.0
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 24 9.0
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 26.2 bits (55), Expect = 1.7
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -2
Query: 293 SSDPGQDPARVSITRWLPTTAGTKSXLTGNSTEPRDKLISSQSGPQEYRFD 141
S D G P RV R LP+ ++S ++E K Q Q Y F+
Sbjct: 277 SLDQGSHPVRVVSIRSLPSGEASESFSEKQASEAEHKDEPEQQRKQFYNFE 327
>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 1.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 274 SWPGSELSPMSITTYGYPF 330
SW G ELSP T Y YP+
Sbjct: 208 SWAG-ELSPEDFTEYAYPY 225
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 26.2 bits (55), Expect = 1.7
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +3
Query: 303 VHHYIRVSV--LNADHHVLVLKNGM 371
VHH +R+S+ LN D HV L+N +
Sbjct: 292 VHHKLRLSISLLNPDGHVSELRNSL 316
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 2.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 183 IDLLAVWPSRVQVRWPWICHDG 118
+DLL PS Q W WI H G
Sbjct: 283 LDLLLHPPSSAQKNWSWIKHVG 304
>SPAC222.08c |||imidazoleglycerol-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 24.6 bits (51), Expect = 5.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 279 PGSGEGLHYKMVADNRWYQ 223
P G H ++ ADNRW++
Sbjct: 201 PFLGTSFHPELTADNRWHE 219
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 24.6 bits (51), Expect = 5.1
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 54 RSVRAEEEKHLIRLRRQITSASHRGISTAIEPVLLRARLRGDQFIPGFC 200
RS A E L+R++ S + G + +E +LL+ + GD+ +C
Sbjct: 1033 RSAVAHAELIYWGLKRELCS-TETGSAVTLESILLQCVMFGDKIYGAYC 1080
>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 24.2 bits (50), Expect = 6.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 18 EDRRLEKVYQAVRSVRAEEEKHLIRLRRQITSA 116
E RLEK Q E E LIR++R++ SA
Sbjct: 49 EQSRLEKNAQIPEYRVRESEAFLIRMQRRLESA 81
>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 471
Score = 23.8 bits (49), Expect = 9.0
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -2
Query: 302 IGDSSDPGQDP---ARVSITRW-LPTTAGTKSXLTGNSTEPRDKLISSQS 165
I ++ P ++P I W T + S + GN++ P++ +ISSQ+
Sbjct: 293 INNTLKPFEEPIAEGNADIEDWTFETVKKSDSTVLGNTSIPKNSIISSQN 342
>SPAC26H5.09c |||GFO/IDH/MocA family
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 369
Score = 23.8 bits (49), Expect = 9.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 276 LARIGAVPDVHHYIRVSVLNADHHVLVLK 362
L I P+VH+ + LNA HVL K
Sbjct: 71 LVVISLPPNVHYEVVSQALNAGKHVLCEK 99
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 23.8 bits (49), Expect = 9.0
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -3
Query: 238 QPLVPSHX*QVTPQNPGIN*SPRSLALKSTGSMAVDMPRWLAEV 107
Q PS +V PQ PG++ +P SL + ++ +EV
Sbjct: 109 QMSTPSRRREVDPQRPGVS-TPSSLLFSGSDALTFSQAHPSSEV 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,667,971
Number of Sequences: 5004
Number of extensions: 34669
Number of successful extensions: 96
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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