Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1712X
(375 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1252 - 35748000-35748173,35748243-35748375,35749771-357498... 29 1.2
08_01_0812 + 7886057-7886872,7887115-7887702 29 1.6
05_05_0036 - 21758409-21758531,21758891-21759206,21759964-217611... 29 1.6
07_03_1268 + 25328448-25328506,25328589-25328768,25328872-253289... 28 2.7
04_04_0326 - 24407201-24407374,24407397-24407460,24408266-244086... 28 2.7
06_03_0285 - 19160898-19161065,19161465-19161564,19163206-19163414 27 3.6
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 27 3.6
02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790 27 3.6
04_03_0517 + 16712487-16712570,16713715-16714059,16714149-167143... 27 4.8
11_04_0212 - 14919074-14919433,14919444-14920514 27 6.3
07_03_1177 - 24574682-24574852,24575047-24575618,24575711-245760... 27 6.3
02_05_0792 - 31777775-31778220,31778506-31778630,31778724-317789... 27 6.3
12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179 26 8.4
03_06_0777 + 36181095-36181311,36181444-36181530,36181785-361827... 26 8.4
03_01_0564 - 4176177-4178096 26 8.4
>01_06_1252 -
35748000-35748173,35748243-35748375,35749771-35749847,
35750465-35750509,35750584-35750679,35751125-35751130,
35751259-35751388,35751510-35751706
Length = 285
Score = 29.1 bits (62), Expect = 1.2
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = -2
Query: 275 DPARVSITRWLPTTAGTK-SXLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLT 99
DP ++ + ++ +K S G+ + +D I SG G A G GY+
Sbjct: 98 DPLKIYLHKYREMEGDSKLSSKAGDGSVKKDT-IGPHSGASSSSAQGMVGAYTQGMGYMQ 156
Query: 98 PQSN-QVLLFFRTYA 57
PQSN +L+ +++A
Sbjct: 157 PQSNFHILVVLQSFA 171
>08_01_0812 + 7886057-7886872,7887115-7887702
Length = 467
Score = 28.7 bits (61), Expect = 1.6
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = -1
Query: 279 PGSGEGLHYKMVADNRWYQVXVDR*LHRTQG*IDLLAVWPSRVQVRWPWICHDGWPRLFD 100
P + GLH +MV DN Y + R R + LL W S++ V W + H G L
Sbjct: 78 PAASSGLH-QMVRDN--YTQGLIRAFGRRRHDEALLHKWFSQLDVEWVLLLHAGQRDLDS 134
Query: 99 ASI 91
+S+
Sbjct: 135 SSV 137
>05_05_0036 -
21758409-21758531,21758891-21759206,21759964-21761121,
21761236-21761333
Length = 564
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 147 VRWPWICHDGWPRLFDASI*SSASLLPHVRSE 52
VR+ W+C+D RL D S+ S S ++ E
Sbjct: 416 VRFEWVCYDSAKRLLDKSLYSVLSDFAQIQDE 447
>07_03_1268 + 25328448-25328506,25328589-25328768,25328872-25328974,
25329095-25329119,25329587-25329614,25330603-25330755,
25331339-25333421,25333666-25334983,25335256-25335339,
25335756-25335769
Length = 1348
Score = 27.9 bits (59), Expect = 2.7
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -2
Query: 320 PYVVMDIGDSSDPGQDPARVSITRWLPTTAGTK-SXLTGNSTEPRDKLISSQS 165
P + + G+S DPG + VS PT G+K + GN + ++ +S S
Sbjct: 1122 PGISHEFGNSDDPGSENGDVSFPSDAPTLGGSKFNAFAGNMHDTPGEVPASWS 1174
>04_04_0326 -
24407201-24407374,24407397-24407460,24408266-24408689,
24408885-24409057,24409178-24409275,24409723-24409853,
24410053-24410174,24411091-24411245,24411976-24412081,
24412328-24412419,24412499-24412620,24413444-24413544,
24413636-24413849,24414173-24414311,24415228-24415584
Length = 823
Score = 27.9 bits (59), Expect = 2.7
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -1
Query: 174 LAVWPSRVQVRWPWICHDGWPRLFDASI*SSASLLPHVRSERLDI 40
LAV PS PW CH R+ +A +S P R E +
Sbjct: 731 LAVTPSMFTDHLPWRCHYAMQRVLEAQTAASCPDSPESRIELFSV 775
>06_03_0285 - 19160898-19161065,19161465-19161564,19163206-19163414
Length = 158
Score = 27.5 bits (58), Expect = 3.6
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 228 TSGCRQPSCNGDPR-RILARIGAVPDVHHYIRVSVLNADH 344
TSGC PS G P R + R+G D H +RV + DH
Sbjct: 63 TSGC--PSKLGLPSTRRIERLGFPDDNDHTLRVKFIGGDH 100
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 257 WRPSPDPGQDRSCPRCPSLHTG 322
WR SP + CP C HTG
Sbjct: 414 WRESPASRAMQKCPACKRTHTG 435
>02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790
Length = 192
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 123 DGWPRL-FDASI*SSASLLPHVRSERLDIP 37
DG R+ FDAS S +L+P +RS R ++P
Sbjct: 131 DGLRRINFDASTNSMVALVPRLRSSRPELP 160
>04_03_0517 + 16712487-16712570,16713715-16714059,16714149-16714301,
16714889-16714972,16715426-16715479,16715552-16715647,
16716163-16716258,16716941-16717086,16717650-16717799,
16717889-16718018,16718128-16718787,16718881-16718979,
16719058-16719210,16719323-16720054,16720338-16720640
Length = 1094
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/43 (25%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +3
Query: 21 DRRLEKVYQAVRSVRAEEEKHLIRLRRQITSASHRGIST-AIE 146
++ EK YQ + +++ ++ ++ L ++++ +SH +T AIE
Sbjct: 1001 EQETEKAYQEIDNLKKNYDQEIVALNQRLSESSHHQETTLAIE 1043
>11_04_0212 - 14919074-14919433,14919444-14920514
Length = 476
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +3
Query: 66 AEEEKHLIRLRRQITSASHRGISTAIEPVLLRARL-----RGDQFI 188
A ++H++R R +H G+S+ +E ++ RL +GDQ++
Sbjct: 355 AHRQQHILRHRSVGCFVNHSGLSSVVEGLVAGCRLVLLPMKGDQYL 400
>07_03_1177 -
24574682-24574852,24575047-24575618,24575711-24576068,
24576108-24576152
Length = 381
Score = 26.6 bits (56), Expect = 6.3
Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Frame = -2
Query: 293 SSDPGQDPARVSITRWLPTTAGTKSXLTGNSTEPRDKLISSQS--GPQEYRFDGRGYATM 120
S + G+ ++ ++ T AG S + G E ++ + ++ +F+ + A +
Sbjct: 157 SYNGGESSRIITFDEFIDTAAGAASRVVGIYPEIKNPVFVNRQVRWRDGKKFEDKFVAAL 216
Query: 119 AGRGY----LTPQSNQVLLFFRTYAPNGLIY 39
RGY ++P +F +++AP L+Y
Sbjct: 217 KRRGYGGRYMSPAWAARPVFIQSFAPTSLVY 247
>02_05_0792 -
31777775-31778220,31778506-31778630,31778724-31778911,
31779716-31779892
Length = 311
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 322 TRM**WTSGTAPILARIRRGSPLQDGCRQP 233
TR+ WT+ PI+A SPL + C P
Sbjct: 3 TRLLCWTALLLPIIAATAAASPLPEACPVP 32
>12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179
Length = 312
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +2
Query: 263 PSPDPGQDRSCPRCPSLHTGIRSECRSPCTRPK 361
PSP RS P P T + SPC P+
Sbjct: 8 PSPSLPPSRSSPHVPPCSTLLHQAPTSPCQAPR 40
>03_06_0777 +
36181095-36181311,36181444-36181530,36181785-36182725,
36182956-36183006,36183240-36183328,36184975-36185078,
36185179-36185278,36185396-36185471,36185556-36185670,
36185755-36186286,36187032-36187527
Length = 935
Score = 26.2 bits (55), Expect = 8.4
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = +1
Query: 115 PAIVAYPRPSNLYS*GPD--CEEINLSLG-SVELPVNXDLVPAVVGNHLVMETLAGSWPG 285
P+I AY P LY GP + +L + LP N L G L +T+ GS
Sbjct: 220 PSIAAYDSPDKLYGVGPSEGTPYVEDTLNCEITLPENQHL-----GETLTSDTMLGSGDA 274
Query: 286 SELSPMSIT 312
S + +S T
Sbjct: 275 SLIQEISDT 283
>03_01_0564 - 4176177-4178096
Length = 639
Score = 26.2 bits (55), Expect = 8.4
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = +2
Query: 173 RRSIYPWVLWSYLSTMTWY 229
RR ++PWVL ++ ++ W+
Sbjct: 467 RRFLFPWVLGGFVMSIIWF 485
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,942,384
Number of Sequences: 37544
Number of extensions: 279475
Number of successful extensions: 908
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -