Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1712X
(375 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical pr... 28 2.5
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 27 3.3
L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore co... 27 3.3
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 27 3.3
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 27 3.3
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 27 3.3
Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z69661-6|CAA93492.4| 299|Caenorhabditis elegans Hypothetical pr... 27 5.8
U64848-8|ABS83847.1| 408|Caenorhabditis elegans Hypothetical pr... 26 7.6
U00046-6|AAN65305.1| 422|Caenorhabditis elegans Mammalian zak k... 26 7.6
U00046-5|AAC47047.4| 516|Caenorhabditis elegans Mammalian zak k... 26 7.6
AY533306-1|AAS21308.1| 383|Caenorhabditis elegans BRE-4 protein. 26 7.6
AY130767-1|AAM95168.1| 383|Caenorhabditis elegans UDPGalNAc:Glc... 26 7.6
AC025727-7|AAG23384.1| 383|Caenorhabditis elegans Bt (bacillus ... 26 7.6
>Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical
protein F47A4.5 protein.
Length = 1071
Score = 27.9 bits (59), Expect = 2.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 299 RCPSLHTGIRSECRSPCTRPKKRY 370
RCP + G RS CR C+ + Y
Sbjct: 679 RCPKGYKGCRSNCRHDCSSAEDEY 702
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -2
Query: 143 DGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIYLL 33
DG GY + + ++ ++ L F T++P+GL++ +
Sbjct: 2902 DGEGYTSYKPSHWNPRKATKISLSFLTFSPHGLLFFV 2938
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -2
Query: 143 DGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIYLL 33
DG GY + + ++ ++ L F T++P+GL++ +
Sbjct: 2902 DGEGYTSYKPSHWNPRKATKISLSFLTFSPHGLLFFV 2938
>L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore
complex protein protein15 protein.
Length = 1127
Score = 27.5 bits (58), Expect = 3.3
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Frame = +2
Query: 122 SWHIHGHRTCTLEGQTARRSIYPWVLWSYLSTMTWYQRLS---ATIL*WRPSPDPGQDRS 292
+WH HR+ + Y WVL S W + S A I P P G RS
Sbjct: 29 NWHASAHRSEVTSNCASLNDRYCWVL-SRNQIFIWERAKSSHRAIIPTQLPLPTSGLPRS 87
Query: 293 CPRCPSLHTGI-RSECRSPC 349
+C ++ G+ R ++PC
Sbjct: 88 V-KCVVVYDGVHRGANKTPC 106
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -2
Query: 143 DGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIYLL 33
DG GY + + ++ ++ L F T++P+GL++ +
Sbjct: 716 DGEGYTSYKPSHWNPRKATKISLSFLTFSPHGLLFFV 752
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -2
Query: 143 DGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIYLL 33
DG GY + + ++ ++ L F T++P+GL++ +
Sbjct: 2902 DGEGYTSYKPSHWNPRKATKISLSFLTFSPHGLLFFV 2938
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -2
Query: 143 DGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIYLL 33
DG GY + + ++ ++ L F T++P+GL++ +
Sbjct: 2902 DGEGYTSYKPSHWNPRKATKISLSFLTFSPHGLLFFV 2938
>Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical
protein R06C7.8 protein.
Length = 987
Score = 26.6 bits (56), Expect = 5.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 92 IEASNNLGQPSWHIHGHRTCTLEGQTAR 175
+E +NN+ P+WHI TC L Q AR
Sbjct: 777 LEYANNMKDPNWHI----TCFLITQMAR 800
>Z69661-6|CAA93492.4| 299|Caenorhabditis elegans Hypothetical
protein F48F7.2 protein.
Length = 299
Score = 26.6 bits (56), Expect = 5.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 15 FEDRRLEKVYQAVRSVRAEEEK 80
+ DRR E+V A+ SVR E EK
Sbjct: 32 YVDRRFEEVRNAIASVRGEIEK 53
>U64848-8|ABS83847.1| 408|Caenorhabditis elegans Hypothetical
protein C50E3.16 protein.
Length = 408
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 182 IYPWVLWSYLSTMTWYQRLSATIL*WRPSPD 274
+ W +WS LS+ +YQ ++ T W P+
Sbjct: 213 VLKWSIWSALSSCIFYQIINYTQTLWGTLPE 243
>U00046-6|AAN65305.1| 422|Caenorhabditis elegans Mammalian zak
kinase homolog protein1, isoform b protein.
Length = 422
Score = 26.2 bits (55), Expect = 7.6
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 36 KVYQAVRSVRAEEEKHL-IRLRRQITSASHRGISTAIEPV 152
KV ++ + EE+H+ +RLRR +SAS S I PV
Sbjct: 262 KVVTSLEESKILEERHVHLRLRRSSSSASISTPSPVIAPV 301
>U00046-5|AAC47047.4| 516|Caenorhabditis elegans Mammalian zak
kinase homolog protein1, isoform a protein.
Length = 516
Score = 26.2 bits (55), Expect = 7.6
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 36 KVYQAVRSVRAEEEKHL-IRLRRQITSASHRGISTAIEPV 152
KV ++ + EE+H+ +RLRR +SAS S I PV
Sbjct: 356 KVVTSLEESKILEERHVHLRLRRSSSSASISTPSPVIAPV 395
>AY533306-1|AAS21308.1| 383|Caenorhabditis elegans BRE-4 protein.
Length = 383
Score = 26.2 bits (55), Expect = 7.6
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 181 NLSLGSVELPVNXDLVPAVVGNHL-VMETLAGSWPGSELSPMS 306
NL++GS L + D + AV+GN + L +W S SP+S
Sbjct: 37 NLTIGSSTLIADVDAMEAVLGNTASTSDDLLDTW-NSTFSPIS 78
>AY130767-1|AAM95168.1| 383|Caenorhabditis elegans
UDPGalNAc:GlcNAc{beta}-R
{beta}1,4-N-acetylgalactosaminyltransferase protein.
Length = 383
Score = 26.2 bits (55), Expect = 7.6
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 181 NLSLGSVELPVNXDLVPAVVGNHL-VMETLAGSWPGSELSPMS 306
NL++GS L + D + AV+GN + L +W S SP+S
Sbjct: 37 NLTIGSSTLIADVDAMEAVLGNTASTSDDLLDTW-NSTFSPIS 78
>AC025727-7|AAG23384.1| 383|Caenorhabditis elegans Bt (bacillus
thuringiensis) toxinresistant protein 4 protein.
Length = 383
Score = 26.2 bits (55), Expect = 7.6
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 181 NLSLGSVELPVNXDLVPAVVGNHL-VMETLAGSWPGSELSPMS 306
NL++GS L + D + AV+GN + L +W S SP+S
Sbjct: 37 NLTIGSSTLIADVDAMEAVLGNTASTSDDLLDTW-NSTFSPIS 78
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,460,480
Number of Sequences: 27780
Number of extensions: 207927
Number of successful extensions: 568
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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