Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1711
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    29   0.91 
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   4.8  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    26   6.4  
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa...    26   6.4  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   8.5  

>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 182 LPDTVDEMSTSTHVSAYFRTKEKDG 108
           LPD V+ +ST+ H  AY    E+DG
Sbjct: 671 LPDLVNRLSTTGHFLAYTANLERDG 695


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 30  EYYDFKTY-RFGSPQHGSLRVAEVQNEAILFLCSEV 134
           + Y+ KTY    SP+  +L +++ + E ++FLC ++
Sbjct: 96  QQYERKTYITDASPESQNLFLSKSKEEGVIFLCIQI 131


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 292 FSKLVGVGGKGELTKINKQNTKPRNHIYKCLIMKI 396
           F + V  GG   L   N Q + PR H Y  L+ +I
Sbjct: 282 FEREVSQGGSLALAVCNAQYSFPRKHPYSTLLCEI 316


>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
           Ark1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 414 VIMMHGNFHDKTFIYMITRF 355
           ++ ++G+FHD+  IY+I  F
Sbjct: 149 ILRLYGHFHDEKRIYLILEF 168


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 127  RKYADTCVEVDISSTVSGRRGCNVDHRSNVTPT 225
            R+Y D CV+  +     GR   + D+RS ++ T
Sbjct: 907  RRYIDICVQRQLREAFDGRPDFSKDYRSLLSIT 939


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,411
Number of Sequences: 5004
Number of extensions: 51422
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)