Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1711
         (734 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M96388-1|AAA28662.1| 3712|Drosophila melanogaster laminin A chai...    61   2e-09
M75882-1|AAA28661.1| 1951|Drosophila melanogaster laminin A chai...    61   2e-09
L07288-1|AAC37178.1| 3712|Drosophila melanogaster laminin A prot...    61   2e-09
AE014296-1101|AAF50672.2| 3712|Drosophila melanogaster CG10236-P...    61   2e-09
AE014297-2740|AAF55726.2| 1491|Drosophila melanogaster CG31213-P...    29   8.7  

>M96388-1|AAA28662.1| 3712|Drosophila melanogaster laminin A chain
            protein.
          Length = 3712

 Score = 60.9 bits (141), Expect = 2e-09
 Identities = 29/72 (40%), Positives = 44/72 (61%)
 Frame = -1

Query: 251  ARTVANRIQVGVTFDRWSTLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGNPKGTM 72
            AR +AN I+VGV F   + L+ + P+    ++T T++S YFRT E  GF+LYLGN   T 
Sbjct: 2664 ARQLANSIKVGVNFKPSTILELKTPEKTKLLATRTNLSTYFRTTEPSGFLLYLGNDNKTA 2723

Query: 71   LRRTKSVCLKII 36
             +    V ++I+
Sbjct: 2724 QKNNDFVAVEIV 2735


>M75882-1|AAA28661.1| 1951|Drosophila melanogaster laminin A chain
            protein.
          Length = 1951

 Score = 60.9 bits (141), Expect = 2e-09
 Identities = 29/72 (40%), Positives = 44/72 (61%)
 Frame = -1

Query: 251  ARTVANRIQVGVTFDRWSTLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGNPKGTM 72
            AR +AN I+VGV F   + L+ + P+    ++T T++S YFRT E  GF+LYLGN   T 
Sbjct: 903  ARQLANSIKVGVNFKPSTILELKTPEKTKLLATRTNLSTYFRTTEPSGFLLYLGNDNKTA 962

Query: 71   LRRTKSVCLKII 36
             +    V ++I+
Sbjct: 963  QKNNDFVAVEIV 974


>L07288-1|AAC37178.1| 3712|Drosophila melanogaster laminin A protein.
          Length = 3712

 Score = 60.9 bits (141), Expect = 2e-09
 Identities = 29/72 (40%), Positives = 44/72 (61%)
 Frame = -1

Query: 251  ARTVANRIQVGVTFDRWSTLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGNPKGTM 72
            AR +AN I+VGV F   + L+ + P+    ++T T++S YFRT E  GF+LYLGN   T 
Sbjct: 2664 ARQLANSIKVGVNFKPSTILELKTPEKTKLLATRTNLSTYFRTTEPSGFLLYLGNDNKTA 2723

Query: 71   LRRTKSVCLKII 36
             +    V ++I+
Sbjct: 2724 QKNNDFVAVEIV 2735


>AE014296-1101|AAF50672.2| 3712|Drosophila melanogaster CG10236-PA
            protein.
          Length = 3712

 Score = 60.9 bits (141), Expect = 2e-09
 Identities = 29/72 (40%), Positives = 44/72 (61%)
 Frame = -1

Query: 251  ARTVANRIQVGVTFDRWSTLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGNPKGTM 72
            AR +AN I+VGV F   + L+ + P+    ++T T++S YFRT E  GF+LYLGN   T 
Sbjct: 2664 ARQLANSIKVGVNFKPSTILELKTPEKTKLLATRTNLSTYFRTTEPSGFLLYLGNDNKTA 2723

Query: 71   LRRTKSVCLKII 36
             +    V ++I+
Sbjct: 2724 QKNNDFVAVEIV 2735


>AE014297-2740|AAF55726.2| 1491|Drosophila melanogaster CG31213-PA
           protein.
          Length = 1491

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = +2

Query: 359 RVIIYINVLS*KLPCIIITKYAICKLL*IKKYRMNKSTKS*SINFWSPYHNSDSTKLICK 538
           + + Y+ ++S  LPCI I KY + +    +K  +     S SI++ + Y  S    L+C 
Sbjct: 19  KAMTYMTLISFFLPCITIAKYVVAEKERHQKAVLTAMGFSNSIHWLAWYTKSMLLLLLCL 78

Query: 539 *KIISNF 559
             +IS F
Sbjct: 79  LIMISIF 85


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,464,825
Number of Sequences: 53049
Number of extensions: 528792
Number of successful extensions: 1047
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3314233461
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)