Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1711
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    49   4e-06
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    49   4e-06
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.    49   4e-06
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    49   4e-06
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    49   4e-06
U10402-5|AAA19066.2|  650|Caenorhabditis elegans Tryptophanyl (w...    30   1.5  
Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 21/59 (35%), Positives = 35/59 (59%)
 Frame = -1

Query: 263  LLTQARTVANRIQVGVTFDRWSTLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGN 87
            ++  AR  ANRI++G  F++ S+L   +P  V   +    +S YFRT+++ G  L+ GN
Sbjct: 2679 MIAVARDAANRIKLGAHFEKGSSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 2737


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 21/59 (35%), Positives = 35/59 (59%)
 Frame = -1

Query: 263  LLTQARTVANRIQVGVTFDRWSTLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGN 87
            ++  AR  ANRI++G  F++ S+L   +P  V   +    +S YFRT+++ G  L+ GN
Sbjct: 2679 MIAVARDAANRIKLGAHFEKGSSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 2737


>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
          Length = 1518

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 21/59 (35%), Positives = 35/59 (59%)
 Frame = -1

Query: 263 LLTQARTVANRIQVGVTFDRWSTLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGN 87
           ++  AR  ANRI++G  F++ S+L   +P  V   +    +S YFRT+++ G  L+ GN
Sbjct: 493 MIAVARDAANRIKLGAHFEKGSSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 551


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 21/59 (35%), Positives = 35/59 (59%)
 Frame = -1

Query: 263  LLTQARTVANRIQVGVTFDRWSTLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGN 87
            ++  AR  ANRI++G  F++ S+L   +P  V   +    +S YFRT+++ G  L+ GN
Sbjct: 2679 MIAVARDAANRIKLGAHFEKGSSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 2737


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 21/59 (35%), Positives = 35/59 (59%)
 Frame = -1

Query: 263  LLTQARTVANRIQVGVTFDRWSTLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGN 87
            ++  AR  ANRI++G  F++ S+L   +P  V   +    +S YFRT+++ G  L+ GN
Sbjct: 2679 MIAVARDAANRIKLGAHFEKGSSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 2737


>U10402-5|AAA19066.2|  650|Caenorhabditis elegans Tryptophanyl (w)
           trna synthetaseprotein 2, isoform a protein.
          Length = 650

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = -1

Query: 191 QPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGNPKGTM 72
           QPR P+ +  +STSTH + YF   +  G I +LGN  G++
Sbjct: 304 QPRDPNNLRLLSTSTHPTIYFTGIQPTG-IPHLGNFFGSI 342


>Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical
           protein T20D3.8 protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -3

Query: 417 FVIMMHGNFHDKTFIYMITRFCILFIYFCKFTLP 316
           F+ ++H N+       + +   +L+++FCKF +P
Sbjct: 67  FLNILHSNWSINILYSVFSLTIVLYLFFCKFLIP 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,084,672
Number of Sequences: 27780
Number of extensions: 289878
Number of successful extensions: 645
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)