Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1710X
(579 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X85108-1|CAA59429.1| 1331|Homo sapiens alpha3b subunit of lamini... 36 0.078
X85107-1|CAA59428.1| 1238|Homo sapiens alpha3a subunit of lamini... 36 0.078
X84900-1|CAA59325.1| 1806|Homo sapiens alpha 3B chain of laminin... 36 0.078
L34155-1|AAA59483.1| 1713|Homo sapiens epiligrin alpha 3 subunit... 36 0.078
AY327116-1|AAQ72571.1| 3277|Homo sapiens laminin alpha 3 splice ... 36 0.078
AY327115-1|AAQ72570.1| 3333|Homo sapiens laminin alpha 3 splice ... 36 0.078
AY327114-1|AAQ72569.1| 1668|Homo sapiens laminin alpha 3 splice ... 36 0.078
AB208853-1|BAD92090.1| 1408|Homo sapiens Laminin alpha 3b chain ... 36 0.078
AB107369-1|BAD13428.1| 3333|Homo sapiens laminin alpha 3b chain ... 36 0.078
AK022439-1|BAB14035.1| 592|Homo sapiens protein ( Homo sapiens ... 30 5.1
AC012486-2|AAX88854.1| 375|Homo sapiens unknown protein. 30 5.1
AB128038-1|BAD13427.1| 922|Homo sapiens GPI inositol-deacylase ... 30 5.1
>X85108-1|CAA59429.1| 1331|Homo sapiens alpha3b subunit of laminin 5
protein.
Length = 1331
Score = 36.3 bits (80), Expect = 0.078
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Frame = -2
Query: 263 LLTQARTVANRIQVGVTFDRWSTLQPRLPDTVDEMSTSTHVSAYFR---TKEKDG----F 105
L+ QAR A+++ V + F+ S ++ RLP+ ++++ T +S + + ++E G F
Sbjct: 849 LIQQARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPNSRENGGTENMF 908
Query: 104 ILYLGN 87
++YLGN
Sbjct: 909 VMYLGN 914
>X85107-1|CAA59428.1| 1238|Homo sapiens alpha3a subunit of laminin 5
protein.
Length = 1238
Score = 36.3 bits (80), Expect = 0.078
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Frame = -2
Query: 263 LLTQARTVANRIQVGVTFDRWSTLQPRLPDTVDEMSTSTHVSAYFR---TKEKDG----F 105
L+ QAR A+++ V + F+ S ++ RLP+ ++++ T +S + + ++E G F
Sbjct: 756 LIQQARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPNSRENGGTENMF 815
Query: 104 ILYLGN 87
++YLGN
Sbjct: 816 VMYLGN 821
>X84900-1|CAA59325.1| 1806|Homo sapiens alpha 3B chain of laminin-5
protein.
Length = 1806
Score = 36.3 bits (80), Expect = 0.078
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Frame = -2
Query: 263 LLTQARTVANRIQVGVTFDRWSTLQPRLPDTVDEMSTSTHVSAYFR---TKEKDG----F 105
L+ QAR A+++ V + F+ S ++ RLP+ ++++ T +S + + ++E G F
Sbjct: 849 LIQQARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPNSRENGGTENMF 908
Query: 104 ILYLGN 87
++YLGN
Sbjct: 909 VMYLGN 914
>L34155-1|AAA59483.1| 1713|Homo sapiens epiligrin alpha 3 subunit
protein.
Length = 1713
Score = 36.3 bits (80), Expect = 0.078
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Frame = -2
Query: 263 LLTQARTVANRIQVGVTFDRWSTLQPRLPDTVDEMSTSTHVSAYFR---TKEKDG----F 105
L+ QAR A+++ V + F+ S ++ RLP+ ++++ T +S + + ++E G F
Sbjct: 756 LIQQARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPNSRENGGTENMF 815
Query: 104 ILYLGN 87
++YLGN
Sbjct: 816 VMYLGN 821
>AY327116-1|AAQ72571.1| 3277|Homo sapiens laminin alpha 3 splice
variant b2 protein.
Length = 3277
Score = 36.3 bits (80), Expect = 0.078
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Frame = -2
Query: 263 LLTQARTVANRIQVGVTFDRWSTLQPRLPDTVDEMSTSTHVSAYFR---TKEKDG----F 105
L+ QAR A+++ V + F+ S ++ RLP+ ++++ T +S + + ++E G F
Sbjct: 2320 LIQQARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPNSRENGGTENMF 2379
Query: 104 ILYLGN 87
++YLGN
Sbjct: 2380 VMYLGN 2385
>AY327115-1|AAQ72570.1| 3333|Homo sapiens laminin alpha 3 splice
variant b1 protein.
Length = 3333
Score = 36.3 bits (80), Expect = 0.078
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Frame = -2
Query: 263 LLTQARTVANRIQVGVTFDRWSTLQPRLPDTVDEMSTSTHVSAYFR---TKEKDG----F 105
L+ QAR A+++ V + F+ S ++ RLP+ ++++ T +S + + ++E G F
Sbjct: 2376 LIQQARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPNSRENGGTENMF 2435
Query: 104 ILYLGN 87
++YLGN
Sbjct: 2436 VMYLGN 2441
>AY327114-1|AAQ72569.1| 1668|Homo sapiens laminin alpha 3 splice
variant a protein.
Length = 1668
Score = 36.3 bits (80), Expect = 0.078
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Frame = -2
Query: 263 LLTQARTVANRIQVGVTFDRWSTLQPRLPDTVDEMSTSTHVSAYFR---TKEKDG----F 105
L+ QAR A+++ V + F+ S ++ RLP+ ++++ T +S + + ++E G F
Sbjct: 711 LIQQARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPNSRENGGTENMF 770
Query: 104 ILYLGN 87
++YLGN
Sbjct: 771 VMYLGN 776
>AB208853-1|BAD92090.1| 1408|Homo sapiens Laminin alpha 3b chain
variant protein.
Length = 1408
Score = 36.3 bits (80), Expect = 0.078
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Frame = -2
Query: 263 LLTQARTVANRIQVGVTFDRWSTLQPRLPDTVDEMSTSTHVSAYFR---TKEKDG----F 105
L+ QAR A+++ V + F+ S ++ RLP+ ++++ T +S + + ++E G F
Sbjct: 451 LIQQARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPNSRENGGTENMF 510
Query: 104 ILYLGN 87
++YLGN
Sbjct: 511 VMYLGN 516
>AB107369-1|BAD13428.1| 3333|Homo sapiens laminin alpha 3b chain
protein.
Length = 3333
Score = 36.3 bits (80), Expect = 0.078
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Frame = -2
Query: 263 LLTQARTVANRIQVGVTFDRWSTLQPRLPDTVDEMSTSTHVSAYFR---TKEKDG----F 105
L+ QAR A+++ V + F+ S ++ RLP+ ++++ T +S + + ++E G F
Sbjct: 2376 LIQQARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPNSRENGGTENMF 2435
Query: 104 ILYLGN 87
++YLGN
Sbjct: 2436 VMYLGN 2441
>AK022439-1|BAB14035.1| 592|Homo sapiens protein ( Homo sapiens
cDNA FLJ12377 fis, clone MAMMA1002524, weakly similar to
HYPOTHETICAL 117.8 KD PROTEIN IN STE2-FRS2 INTERGENIC
REGION. ).
Length = 592
Score = 30.3 bits (65), Expect = 5.1
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +1
Query: 34 IMILRHTDLVLLSMVPLGLPRYRMKPSFSFVRKYADTCVEVDISSTVSGRRGCNVDHRSN 213
I+ RH +L LS+ G Y+++ +F+ K + + + S+ + + DH S
Sbjct: 227 ILNARHINLTTLSVAG-GFRDYQVRSGLTFLPKLSHHTSALSVVSSAVPKTWVSTDHLSI 285
Query: 214 VTPT*MRLATVRAW 255
V ++L TVRA+
Sbjct: 286 VWCKQLQLTTVRAF 299
>AC012486-2|AAX88854.1| 375|Homo sapiens unknown protein.
Length = 375
Score = 30.3 bits (65), Expect = 5.1
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +1
Query: 34 IMILRHTDLVLLSMVPLGLPRYRMKPSFSFVRKYADTCVEVDISSTVSGRRGCNVDHRSN 213
I+ RH +L LS+ G Y+++ +F+ K + + + S+ + + DH S
Sbjct: 10 ILNARHINLTTLSVAG-GFRDYQVRSGLTFLPKLSHHTSALSVVSSAVPKTWVSTDHLSI 68
Query: 214 VTPT*MRLATVRAW 255
V ++L TVRA+
Sbjct: 69 VWCKQLQLTTVRAF 82
>AB128038-1|BAD13427.1| 922|Homo sapiens GPI inositol-deacylase
PGAP1 protein.
Length = 922
Score = 30.3 bits (65), Expect = 5.1
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +1
Query: 34 IMILRHTDLVLLSMVPLGLPRYRMKPSFSFVRKYADTCVEVDISSTVSGRRGCNVDHRSN 213
I+ RH +L LS+ G Y+++ +F+ K + + + S+ + + DH S
Sbjct: 227 ILNARHINLTTLSVAG-GFRDYQVRSGLTFLPKLSHHTSALSVVSSAVPKTWVSTDHLSI 285
Query: 214 VTPT*MRLATVRAW 255
V ++L TVRA+
Sbjct: 286 VWCKQLQLTTVRAF 299
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,894,497
Number of Sequences: 237096
Number of extensions: 1355483
Number of successful extensions: 2259
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2259
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5985693436
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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