Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1710X
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   0.94 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   3.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.8  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -1

Query: 417 FVIMMHGNFHDKTFIYMITRFCI 349
           FV+ +   F D+ ++YM+   C+
Sbjct: 427 FVVKLFKTFKDRKYLYMLMEACL 449


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -1

Query: 393 FHDKTFIYMITRFCILFIYFCKFTLPTYP 307
           +HDKT +YM     +  +  C     +YP
Sbjct: 115 YHDKTLLYMSK---LTLVLSCAMKFESYP 140


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = -2

Query: 236 NRIQVGVTFDRWSTLQ 189
           N +++G+ FD++  +Q
Sbjct: 168 NGVEIGINFDKYDNIQ 183


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -2

Query: 170 VDEMSTSTHVSAYFRTKEKDGFILYLGNPKGTML 69
           V E+     +  YFR   +D  + +LG  K   L
Sbjct: 76  VSELDMDYSMDCYFRQSWRDSRLSFLGPIKSLSL 109


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 372 YMITRFCILFIYF 334
           Y ++ FC+LF+ F
Sbjct: 448 YAVSGFCLLFLMF 460


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 372 YMITRFCILFIYF 334
           Y ++ FC+LF+ F
Sbjct: 501 YAVSGFCLLFLMF 513


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,320
Number of Sequences: 438
Number of extensions: 3230
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)