Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1708X
         (419 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   3.7  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    20   8.5  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    20   8.5  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    20   8.5  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    20   8.5  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 198 IIPVIYNLYSIKLMSKFCI 254
           I P++YNL S K  + F I
Sbjct: 346 INPILYNLMSSKFRTGFII 364


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 204 PVIYNLYSIKLMSKF 248
           P++YN+ S K  S F
Sbjct: 350 PILYNIISSKFRSGF 364


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 195 FIIPVIYNLYSIK 233
           F++P+I+NL S K
Sbjct: 212 FMLPIIHNLLSDK 224


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 135 LFIYKSLIITAANLRRYHIRYNYIILITLLYKFFL 31
           +FI  S+   +A L    I ++ ++L+T    FF+
Sbjct: 246 IFIVVSIFYMSAYLISNPIMWDRVMLLTFWSAFFI 280


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 210 IYNLYSIKLMSKFCI 254
           +YN++   +M  FCI
Sbjct: 72  VYNIFGAFVMGLFCI 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,622
Number of Sequences: 336
Number of extensions: 1541
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9279512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)