Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1708X
         (419 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0210 - 15874289-15875663,15878248-15879263                       27   6.1  
02_04_0546 - 23782400-23782599,23782744-23782830,23782923-237834...    27   6.1  
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493...    27   8.1  

>10_08_0210 - 15874289-15875663,15878248-15879263
          Length = 796

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 264 NLCQYRTLTLVLYYIDYKLQE**IKYEYYNLPIR*QTLQYLKRLFIYKSL-IITAANLRR 88
           ++   +T  L L +  YKL    ++  ++NLPI    LQ  +RL +Y  L    AAN +R
Sbjct: 265 DILDQKTKDLCLSFALYKL----LRRRFFNLPIHEARLQKTRRLVVYGILGEGDAANYKR 320


>02_04_0546 -
           23782400-23782599,23782744-23782830,23782923-23783442,
           23783801-23784000,23784457-23784561,23784923-23785020,
           23785168-23785271
          Length = 437

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 215 INYRNDKLNMNTITYLYVNKLYNI*NDYLFT 123
           I Y ND LN +++ YL  N   N  +DY+FT
Sbjct: 264 IVYAND-LNPDSVRYLRTNAQINKVDDYIFT 293


>01_06_0102 - 26447286-26448107,26448248-26448385,26448990-26449359,
            26449505-26449606,26449696-26449788,26449934-26450181,
            26451088-26451274,26451825-26452043,26452464-26452660,
            26453545-26453875,26454099-26454457,26455141-26455240,
            26455349-26455464,26455547-26455663,26455782-26455880,
            26456057-26456131,26456205-26456286,26457724-26457763,
            26458685-26458769,26458924-26459055
          Length = 1303

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -3

Query: 294  LLSYSDLYNFNLCQYRTLTLVLYY 223
            +L+ + L++ N+C Y+TLT + Y+
Sbjct: 1021 MLAEAVLHSQNVCDYQTLTRIFYF 1044


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,911,567
Number of Sequences: 37544
Number of extensions: 115236
Number of successful extensions: 162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)